Z. japonica Nagirizaki
Zjn_sc00015.1.g02440.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G21240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 476 6 475 e-172 116.8 62 77.3
Subject 556 14 482
Annot | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556
NR ref|XP_004973586.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 476 1 476 0.0 113.4 86.6 92.4
Subject 540 1 470
Annot PREDICTED: probable 4-coumarate--CoA ligase 5 [Setaria italica]
IRGSP Os08t0448000-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 476 1 464 0.0 113.2 80.3 86.3
Subject 539 1 453
Annot
Sbicolor Sobic.007G145600.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 476 3 476 0.0 116 86.1 92.4
Subject 552 5 475
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g02440.1.sm.mk length: 476 aa.
IPR000873 AMP-dependent synthetase/ligase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00501 AMP-binding 1.1e-104 36-449
IPR020845 AMP-binding, conserved site
PatternScan PS00455 AMP_BINDING NA 193-204
no_ID  
Gene3D G3DSA:2.30.38.10 no description 3.4e-29 365-440
Gene3D G3DSA:3.30.300.30 no description 1.5e-05 444-475
Gene3D G3DSA:3.40.50.980 no description 1.5e-46 30-198
199-353
HMMPanther PTHR24096 FAMILY 1e-210 9-476
HMMPanther PTHR24096:SF16 SUBFAMILY 1e-210 9-476
Seg seg seg NA 116-137
superfamily SSF56801 Acetyl-CoA 2.6e-140 29-475
Pseudomolecule
Chromosome Start End Strand
1461360366137466-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 1600986 1602416 . - . ID=Zjn_sc00015.1.g02440.1.sm.mk:exon:1

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