Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00015.1.g02170.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00015.1)

BLAST

TAIR10	AT1G15950.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	352	4	350	e-130	97.7	67.9	79.3
		Subject	344	3	342
		Annot	\| Symbols: CCR1, IRX4, ATCCR1 \| cinnamoyl coa reductase 1 \| chr1:5478855-5481915 FORWARD LENGTH=344
NR	gb\|AAL47182.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	352	1	352	e-174	102.8	85.8	93.5
		Subject	362	1	362
		Annot	cinnamoyl-CoA reductase [Lolium perenne] gi\|17978551\|gb\|AAL47183.1\| cinnamoyl-CoA reductase [Lolium perenne] gi\|756179203\|gb\|AJK93389.1\| cinnamoyl CoA reductase [Lolium perenne]
IRGSP	Os08t0441500-01_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	352	17	352	e-172	102.6	83.2	89.2
		Subject	361	21	361
		Annot
Sbicolor	Sobic.007G141200.1.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	352	17	352	e-174	106.3	89.5	91.8
		Subject	374	27	374
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001509	NAD-dependent epimerase/dehydratase
Zjn_sc00015.1.g02170.1.sm.mkhc				length: 352 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0044237	cellular metabolic process
Molecular Function	GO:0050662	coenzyme binding
HMMPfam	PF01370	Epimerase	4.5e-25	24-252
IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	no description	2.2e-56	23-317
no_ID
HMMPanther	PTHR10366	NAD	6.6e-162	17-336
HMMPanther	PTHR10366:SF9	CINNAMOYL-COA	6.6e-162	17-336
Seg	seg	seg	NA	3-16 185-204
superfamily	SSF51735	NAD(P)-binding	7e-66	20-322

Pseudomolecule

Chromosome	Start	End	Strand
14	5991115	5995646	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00015.1	maker	exon	1456065	1456353	.	-	.	ID=Zjn_sc00015.1.g02170.1.sm.mkhc:exon:5
Zjn_sc00015.1	maker	exon	1458041	1458393	.	-	.	ID=Zjn_sc00015.1.g02170.1.sm.mkhc:exon:4
Zjn_sc00015.1	maker	exon	1459846	1460034	.	-	.	ID=Zjn_sc00015.1.g02170.1.sm.mkhc:exon:3
Zjn_sc00015.1	maker	exon	1460156	1460299	.	-	.	ID=Zjn_sc00015.1.g02170.1.sm.mkhc:exon:2
Zjn_sc00015.1	maker	exon	1460444	1460596	.	-	.	ID=Zjn_sc00015.1.g02170.1.sm.mkhc:exon:1