Z. japonica Nagirizaki
Zjn_sc00015.1.g01510.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 31 90 2e-25 215.1 46.2 54.7
Subject 228 1 60
Annot | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835695-17838621 REVERSE LENGTH=228
NR ref|XP_006351704.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 31 90 5e-24 227.4 50 54.7
Subject 241 1 60
Annot PREDICTED: agamous-like MADS-box protein AGL21-like isoform X1 [Solanum tuberosum] gi|565370181|ref|XP_006351705.1| PREDICTED: agamous-like MADS-box protein AGL21-like isoform X2 [Solanum tuberosum]
IRGSP Os04t0461300-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 31 91 1e-26 70.8 50 57.5
Subject 75 1 61
Annot
Sbicolor Sobic.007G135300.2.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 31 90 2e-26 85.8 50.9 54.7
Subject 91 1 60
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g01510.1.am.mk length: 106 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.3e-28 33-53
53-68
68-89
HMMPfam PF00319 SRF-TF 1.2e-25 40-88
HMMSmart SM00432 no description 7.7e-39 31-90
PatternScan PS00350 MADS_BOX_1 NA 33-87
ProfileScan PS50066 MADS_BOX_2 31.455 31-91
superfamily SSF55455 SRF-like 4.8e-26 32-91
no_ID  
HMMPanther PTHR11945 MADS 8.5e-42 21-90
HMMPanther PTHR11945:SF19 MADS 8.5e-42 21-90
Pseudomolecule
Chromosome Start End Strand
1456734025674511-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 1138352 1138609 . - . ID=Zjn_sc00015.1.g01510.1.am.mk:exon:2
Zjn_sc00015.1 maker_non_over exon 1139399 1139461 . - . ID=Zjn_sc00015.1.g01510.1.am.mk:exon:1

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