Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00015.1.g01350.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00015.1)

BLAST

TAIR10	AT3G02520.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	2	243	e-126	104.3	83.5	91.3
		Subject	265	4	245
		Annot	\| Symbols: GRF7, GF14 NU \| general regulatory factor 7 \| chr3:526800-527915 REVERSE LENGTH=265
NR	gb\|AAP48904.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-138	100.8	96.9	98.8
		Subject	256	1	256
		Annot	14-3-3-like protein [Saccharum hybrid cultivar CP65-357] gi\|397702099\|gb\|AFO59571.1\| 14-3-3-like protein [Saccharum hybrid cultivar GT28] gi\|614500762\|gb\|AHX42563.1\| 14-3-3 protein [Saccharum hybrid cultivar ROC22]
IRGSP	Os08t0430500-02_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-137	100.8	94.5	97.2
		Subject	256	1	256
		Annot
Sbicolor	Sobic.007G134000.2.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-140	100.8	96.5	98.4
		Subject	256	1	256
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000308	14-3-3 protein
Zjn_sc00015.1.g01350.1.sm.mkhc				length: 254 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0019904	protein domain specific binding
FPrintScan	PR00305	1433ZETA	5.3e-89	37-66 86-110 117-139 152-178 179-205 206-235
HMMPIR	PIRSF000868	14-3-3	6.7e-182	1-245
HMMPanther	PTHR18860	14-3-3	2.7e-185	1-251
IPR023409	14-3-3 protein, conserved site
PatternScan	PS00796	1433_1	NA	43-53
PatternScan	PS00797	1433_2	NA	215-234
IPR023410	14-3-3 domain
Gene3D	G3DSA:1.20.190.20	no description	1.5e-115	1-233
HMMPfam	PF00244	14-3-3	8.6e-114	3-239
HMMSmart	SM00101	14-3-3	3e-202	3-246
superfamily	SSF48445	14-3-3	3e-104	1-235
no_ID
Coil	coil	coiled-coil	NA	9-30
HMMPanther	PTHR18860:SF0	SUBFAMILY	2.7e-185	1-251
Seg	seg	seg	NA	238-249

Pseudomolecule

Chromosome	Start	End	Strand
14	5568267	5572146	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00015.1	maker	exon	1033217	1034115	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:6
Zjn_sc00015.1	maker	exon	1034203	1034319	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:5
Zjn_sc00015.1	maker	exon	1035183	1035305	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:4
Zjn_sc00015.1	maker	exon	1035429	1035507	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:3
Zjn_sc00015.1	maker	exon	1035586	1035998	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:2
Zjn_sc00015.1	maker	exon	1037014	1037096	.	-	.	ID=Zjn_sc00015.1.g01350.1.sm.mkhc:exon:1