Z. japonica Nagirizaki
Zjn_sc00015.1.g01220.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004973483.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
1 |
205 |
4e-62 |
206.8 |
67.8 |
78.5 |
| Subject |
424 |
222 |
424 |
|
| Annot |
PREDICTED: protein TIFY 6A-like [Setaria italica] |
| IRGSP |
Os08t0428400-01_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
1 |
205 |
4e-51 |
208.3 |
59.5 |
72.7 |
| Subject |
427 |
226 |
427 |
|
| Annot |
|
| Sbicolor |
Sobic.007G132700.1.p|Chr07|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
1 |
205 |
1e-62 |
208.8 |
66.3 |
76.1 |
| Subject |
428 |
228 |
428 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00015.1.g01220.1.sm.mkhc |
length: 205 aa. |
| IPR018467 |
CO/COL/TOC1, conserved site |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF09425 |
CCT_2 |
1.1e-12 |
122-147 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
81-124 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 14 | 5497626 | 5499614 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00015.1 |
maker |
exon |
962576 |
963581 |
. |
- |
. |
ID=Zjn_sc00015.1.g01220.1.sm.mkhc:exon:5 |
| Zjn_sc00015.1 |
maker |
exon |
963717 |
963774 |
. |
- |
. |
ID=Zjn_sc00015.1.g01220.1.sm.mkhc:exon:4 |
| Zjn_sc00015.1 |
maker |
exon |
963891 |
964260 |
. |
- |
. |
ID=Zjn_sc00015.1.g01220.1.sm.mkhc:exon:3 |
| Zjn_sc00015.1 |
maker |
exon |
964370 |
964454 |
. |
- |
. |
ID=Zjn_sc00015.1.g01220.1.sm.mkhc:exon:2 |
| Zjn_sc00015.1 |
maker |
exon |
964545 |
964564 |
. |
- |
. |
ID=Zjn_sc00015.1.g01220.1.sm.mkhc:exon:1 |