Z. japonica Nagirizaki
Zjn_sc00014.1.g09730.1.am.mkhc ( /TE )
Sequence
-
BLAST
| TAIR10 |
AT3G19770.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
32 |
149 |
2e-27 |
234.2 |
27.5 |
39.6 |
| Subject |
520 |
11 |
164 |
|
| Annot |
| Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520 |
| NR |
ref|NP_001136555.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
19 |
149 |
1e-50 |
157.7 |
47.3 |
52.3 |
| Subject |
350 |
1 |
167 |
|
| Annot |
hypothetical protein [Zea mays] gi|194696158|gb|ACF82163.1| unknown [Zea mays] gi|414873855|tpg|DAA52412.1| TPA: hypothetical protein ZEAMMB73_530565 [Zea mays] |
| IRGSP |
Os03t0262900-02_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
18 |
149 |
7e-32 |
216.2 |
32.9 |
45.5 |
| Subject |
480 |
9 |
173 |
|
| Annot |
|
| Sbicolor |
Sobic.001G017800.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
19 |
149 |
3e-54 |
157.7 |
47.7 |
52.3 |
| Subject |
350 |
1 |
167 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00014.1.g09730.1.am.mkhc |
length: 222 aa. |
| IPR003123 |
Vacuolar sorting protein 9 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF02204 |
VPS9 |
1.3e-05 |
124-150 |
| ProfileScan |
PS51205 |
VPS9 |
11.490 |
87-222 |
| no_ID |
|
| HMMPanther |
PTHR23101 |
RAB |
4.3e-24 |
66-148 |
| HMMPanther |
PTHR23101:SF25 |
SUBFAMILY |
4.3e-24 |
66-148 |
| Seg |
seg |
seg |
NA |
1-22 |
| superfamily |
SSF109993 |
VPS9 |
1.2e-18 |
26-149 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 411785 | 414870 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00014.1 |
maker |
exon |
4270463 |
4270657 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:1 |
| Zjn_sc00014.1 |
maker |
exon |
4270953 |
4271123 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:2 |
| Zjn_sc00014.1 |
maker |
exon |
4271496 |
4271576 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:3 |
| Zjn_sc00014.1 |
maker |
exon |
4272034 |
4272082 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:4 |
| Zjn_sc00014.1 |
maker |
exon |
4272387 |
4272749 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:5 |
| Zjn_sc00014.1 |
maker |
exon |
4272835 |
4273548 |
. |
+ |
. |
ID=Zjn_sc00014.1.g09730.1.am.mkhc:exon:6 |