Z. japonica Nagirizaki
Zjn_sc00014.1.g09530.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G64740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 980 1 785 0.0 110.6 50.1 59.3
Subject 1084 1 716
Annot | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084
NR ref|XP_004981133.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 980 1 789 0.0 111.2 68.6 70.9
Subject 1090 1 725
Annot PREDICTED: probable cellulose synthase A catalytic subunit 5 [UDP-forming] [Setaria italica]
IRGSP Os03t0837100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 980 1 789 0.0 111.4 67.8 69.7
Subject 1092 1 727
Annot
Sbicolor Sobic.001G021500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 980 1 789 0.0 111.2 68.4 70.5
Subject 1090 1 725
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g09530.1.sm.mkhc length: 980 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.580 77-123
IPR005150 Cellulose synthase
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 2.5e-200 427-788
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.2e-28 66-134
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 7.6e-35 67-132
no_ID  
Coil coil coiled-coil NA 525-546
HMMPanther PTHR13301 X-BOX 0 54-979
HMMPanther PTHR13301:SF21 CELLULOSE 0 54-979
Seg seg seg NA 51-66
174-186
218-229
312-322
729-749
875-887
superfamily SSF57850 RING/U-box 9.9e-33 59-131
Pseudomolecule
Chromosome Start End Strand
2494044499205-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 4186128 4186322 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:1
Zjn_sc00014.1 maker exon 4186360 4186872 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 4186972 4187074 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 4187158 4187320 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 4187689 4187955 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:5
Zjn_sc00014.1 maker exon 4188032 4188377 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:6
Zjn_sc00014.1 maker exon 4188480 4188617 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:7
Zjn_sc00014.1 maker exon 4188734 4188859 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:8
Zjn_sc00014.1 maker exon 4188957 4189169 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:9
Zjn_sc00014.1 maker exon 4189266 4189408 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:10
Zjn_sc00014.1 maker exon 4189439 4189563 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:11
Zjn_sc00014.1 maker exon 4189684 4189709 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:12
Zjn_sc00014.1 maker exon 4190396 4191289 . + . ID=Zjn_sc00014.1.g09530.1.sm.mkhc:exon:13

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