Z. japonica Nagirizaki
Zjn_sc00014.1.g08500.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G28550.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 12 275 3e-65 124.7 44.1 53.2
Subject 464 37 326
Annot | Symbols: RAP2.7 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=464
NR ref|XP_004981271.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 1 367 e-123 115.1 75.3 81.2
Subject 428 1 427
Annot PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 [Setaria italica]
IRGSP Os03t0818800-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 1 372 e-102 115.6 66.7 75.3
Subject 430 1 430
Annot
Sbicolor Sobic.001G036800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 1 369 e-124 116.1 74.7 80.4
Subject 432 1 432
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g08500.1.sm.mk length: 372 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:3.30.730.10 no description 0.00017 112-168
204-242
HMMPfam PF00847 AP2 4.2e-06 111-160
203-241
HMMSmart SM00380 DNA-binding 7.4e-06 112-174
204-253
ProfileScan PS51032 AP2_ERF 8.821 112-168
204-245
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.2e-09 111-171
203-241
no_ID  
HMMPanther PTHR32467 FAMILY 4.5e-109 82-241
HMMPanther PTHR32467:SF0 SUBFAMILY 4.5e-109 82-241
Seg seg seg NA 13-27
42-56
63-80
144-155
351-362
Pseudomolecule
Chromosome Start End Strand
2865029868393-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker_non_over exon 3816940 3817328 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:1
Zjn_sc00014.1 maker_non_over exon 3817441 3817466 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:2
Zjn_sc00014.1 maker_non_over exon 3817566 3817596 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:3
Zjn_sc00014.1 maker_non_over exon 3817689 3817776 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:4
Zjn_sc00014.1 maker_non_over exon 3817856 3818001 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:5
Zjn_sc00014.1 maker_non_over exon 3818517 3818561 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:6
Zjn_sc00014.1 maker_non_over exon 3818620 3818761 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:7
Zjn_sc00014.1 maker_non_over exon 3818944 3818988 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:8
Zjn_sc00014.1 maker_non_over exon 3820098 3820304 . + . ID=Zjn_sc00014.1.g08500.1.sm.mk:exon:9

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