Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00014.1.g07700.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00014.1)

BLAST

TAIR10	AT4G34640.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	363	1	362	e-118	112.9	61.2	75.5
		Subject	410	1	409
		Annot	\| Symbols: SQS1, ERG9 \| squalene synthase 1 \| chr4:16538489-16541655 FORWARD LENGTH=410
NR	ref\|NP_001130502.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	363	1	363	e-155	111	79.6	85.1
		Subject	403	1	403
		Annot	uncharacterized protein LOC100191601 [Zea mays] gi\|194689326\|gb\|ACF78747.1\| unknown [Zea mays]
IRGSP	Os03t0805100-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	363	1	363	e-144	111	75.8	82.9
		Subject	403	1	403
		Annot
Sbicolor	Sobic.001G049600.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	363	1	363	e-158	111	79.6	85.1
		Subject	403	1	403
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002060	Squalene/phytoene synthase
Zjn_sc00014.1.g07700.1.sm.mkhc				length: 363 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0009058	biosynthetic process
Molecular Function	GO:0016740	transferase activity
HMMPfam	PF00494	SQS_PSY	4.5e-09	187-285
IPR008949	Terpenoid synthase
Gene3D	G3DSA:1.10.600.10	no description	3e-35	26-63 94-185 187-319
superfamily	SSF48576	Terpenoid	3.3e-07	94-323 31-63
no_ID
HMMPanther	PTHR11626	FARNESYL-DIPHOSPHATE	6e-114	1-362
HMMPanther	PTHR11626:SF0	SUBFAMILY	6e-114	1-362
Seg	seg	seg	NA	344-357

Pseudomolecule

Chromosome	Start	End	Strand
2	1162259	1169443	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00014.1	maker	exon	3515890	3516168	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:1
Zjn_sc00014.1	maker	exon	3516207	3516249	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:2
Zjn_sc00014.1	maker	exon	3516358	3516447	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:3
Zjn_sc00014.1	maker	exon	3516562	3516637	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:4
Zjn_sc00014.1	maker	exon	3517090	3517159	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:5
Zjn_sc00014.1	maker	exon	3518075	3518179	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:6
Zjn_sc00014.1	maker	exon	3518496	3518642	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:7
Zjn_sc00014.1	maker	exon	3519853	3519945	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:8
Zjn_sc00014.1	maker	exon	3520490	3520581	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:9
Zjn_sc00014.1	maker	exon	3520654	3520693	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:10
Zjn_sc00014.1	maker	exon	3520773	3520892	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:11
Zjn_sc00014.1	maker	exon	3520980	3523074	.	+	.	ID=Zjn_sc00014.1.g07700.1.sm.mkhc:exon:12