Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00014.1.g07630.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00014.1)

BLAST

TAIR10	AT1G74800.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	623	245	623	e-173	107.9	44.6	52.5
		Subject	672	291	672
		Annot	\| Symbols: \| Galactosyltransferase family protein \| chr1:28102221-28104993 REVERSE LENGTH=672
NR	ref\|XP_002463707.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	623	245	623	0.0	105.3	55.4	59.1
		Subject	656	278	656
		Annot	hypothetical protein SORBIDRAFT_01g004630 [Sorghum bicolor] gi\|241917561\|gb\|EER90705.1\| hypothetical protein SORBIDRAFT_01g004630 [Sorghum bicolor]
IRGSP	Os07t0195200-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	623	245	623	0.0	106.4	46.4	53.9
		Subject	663	286	663
		Annot
Sbicolor	Sobic.001G050500.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	623	245	623	0.0	105.3	55.4	59.1
		Subject	656	278	656
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001079	Galectin, carbohydrate recognition domain
Zjn_sc00014.1.g07630.1.am.mkhc				length: 623 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0030246	carbohydrate binding
HMMPfam	PF00337	Gal-bind_lectin	2.9e-20	259-344
HMMSmart	SM00908	Galactoside-binding	0.0021	238-345
ProfileScan	PS51304	GALECTIN	12.855	142-346
IPR002659	Glycosyl transferase, family 31
Biological Process	GO:0006486	protein glycosylation
Molecular Function	GO:0008378	galactosyltransferase activity
Cellular Component	GO:0016020	membrane
HMMPanther	PTHR11214	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASET[243-623]	5.3e-233
HMMPfam	PF01762	Galactosyl_T	1e-32	392-571
IPR008985	Concanavalin A-like lectin/glucanases superfamily
superfamily	SSF49899	Concanavalin	6.2e-12	287-348
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
Gene3D	G3DSA:2.60.120.200	no description	1e-10	286-343
no_ID
HMMPanther	PTHR11214:SF11	BETA	5.3e-233	243-623
Seg	seg	seg	NA	82-96 108-119 147-157 182-187

Pseudomolecule

Chromosome	Start	End	Strand
2	1184266	1188755	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00014.1	maker	exon	3496578	3497422	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:7
Zjn_sc00014.1	maker	exon	3497655	3497762	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:6
Zjn_sc00014.1	maker	exon	3498820	3498993	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:5
Zjn_sc00014.1	maker	exon	3499085	3499213	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:4
Zjn_sc00014.1	maker	exon	3499319	3499606	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:3
Zjn_sc00014.1	maker	exon	3499715	3499947	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:2
Zjn_sc00014.1	maker	exon	3500335	3501067	.	-	.	ID=Zjn_sc00014.1.g07630.1.am.mkhc:exon:1