Z. japonica Nagirizaki
Zjn_sc00014.1.g07300.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G54640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 71 219 1e-50 119.1 32.1 45.4
Subject 312 49 197
Annot | Symbols: TSA1, TRP3 | tryptophan synthase alpha chain | chr3:20223331-20225303 REVERSE LENGTH=312
NR ref|XP_002463738.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 219 9e-66 124.4 53.8 62.2
Subject 326 1 209
Annot hypothetical protein SORBIDRAFT_01g005150 [Sorghum bicolor] gi|241917592|gb|EER90736.1| hypothetical protein SORBIDRAFT_01g005150 [Sorghum bicolor]
IRGSP Os03t0797500-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 219 7e-64 123.3 53.4 59.9
Subject 323 1 208
Annot
Sbicolor Sobic.001G056500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 262 1 219 1e-68 124.4 53.8 62.2
Subject 326 1 209
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g07300.1.sm.mkhc length: 262 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HMMPfam PF00290 Trp_syntA 1.9e-50 78-219
HMMTigr TIGR00262 trpA: 8.6e-43 79-219
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 6.2e-51 70-262
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.8e-06 73-218
219-261
IPR018204 Tryptophan synthase, alpha chain, active site
Molecular Function GO:0004834 tryptophan synthase activity    
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 117-130
no_ID  
HMMPanther PTHR10314 SER/THR 4.1e-69 49-219
HMMPanther PTHR10314:SF4 TRYTOPHAN 4.1e-69 49-219
Seg seg seg NA 44-66
135-145
180-189
Pseudomolecule
Chromosome Start End Strand
213425951344624+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 3340709 3341029 . - . ID=Zjn_sc00014.1.g07300.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 3341875 3341951 . - . ID=Zjn_sc00014.1.g07300.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 3342056 3342377 . - . ID=Zjn_sc00014.1.g07300.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 3342484 3342738 . - . ID=Zjn_sc00014.1.g07300.1.sm.mkhc:exon:1

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