Z. japonica Nagirizaki
Zjn_sc00014.1.g06430.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G44520.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
32 |
292 |
3e-70 |
98 |
45 |
59.3 |
| Subject |
296 |
17 |
274 |
|
| Annot |
| Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:17934610-17936441 REVERSE LENGTH=296 |
| NR |
ref|XP_004981543.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
1 |
302 |
e-126 |
99 |
80.5 |
88.7 |
| Subject |
299 |
1 |
299 |
|
| Annot |
PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic [Setaria italica] |
| IRGSP |
Os03t0781400-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
58 |
302 |
e-114 |
99 |
66.2 |
73.8 |
| Subject |
299 |
55 |
299 |
|
| Annot |
|
| Sbicolor |
Sobic.001G069000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
1 |
301 |
e-125 |
97 |
76.5 |
83.1 |
| Subject |
293 |
1 |
292 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00014.1.g06430.1.sm.mkhc |
length: 302 aa. |
| IPR004788 |
Ribose 5-phosphate isomerase, type A |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004751 |
ribose-5-phosphate isomerase activity |
|
|
| Biological Process |
GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
|
|
| HMMPanther |
PTHR11934 |
RIBOSE-5-PHOSPHATE |
1.2e-68 |
13-296 |
| HMMPfam |
PF06026 |
Rib_5-P_isom_A |
2.1e-14 |
103-289 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.70.260 |
no description |
2e-07 |
204-274 |
| Gene3D |
G3DSA:3.40.50.1360 |
no description |
7.6e-21 |
61-203 |
| HMMPanther |
PTHR11934:SF0 |
SUBFAMILY |
1.2e-68 |
13-296 |
| superfamily |
SSF100950 |
NagB/RpiA/CoA |
3.5e-14 |
53-210 |
| superfamily |
SSF75445 |
D-ribose-5-phosphate |
2.9e-10 |
188-275 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 1730416 | 1732972 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00014.1 |
maker |
exon |
2952361 |
2952564 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:10 |
| Zjn_sc00014.1 |
maker |
exon |
2953125 |
2953199 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:9 |
| Zjn_sc00014.1 |
maker |
exon |
2953276 |
2953342 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:8 |
| Zjn_sc00014.1 |
maker |
exon |
2953446 |
2953563 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:7 |
| Zjn_sc00014.1 |
maker |
exon |
2953674 |
2953730 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:6 |
| Zjn_sc00014.1 |
maker |
exon |
2953807 |
2953902 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:5 |
| Zjn_sc00014.1 |
maker |
exon |
2954035 |
2954142 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:4 |
| Zjn_sc00014.1 |
maker |
exon |
2954278 |
2954347 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:3 |
| Zjn_sc00014.1 |
maker |
exon |
2954519 |
2954646 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:2 |
| Zjn_sc00014.1 |
maker |
exon |
2954723 |
2954917 |
. |
- |
. |
ID=Zjn_sc00014.1.g06430.1.sm.mkhc:exon:1 |