Z. japonica Nagirizaki
Zjn_sc00014.1.g05830.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G08150.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 488 215 488 8e-80 81.6 34.2 40.6
Subject 398 115 398
Annot | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabidopsis thaliana | chr4:5147969-5150610 REVERSE LENGTH=398
NR ref|XP_004981606.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 488 153 487 e-121 70.1 51 56.8
Subject 342 1 341
Annot PREDICTED: homeobox protein knotted-1-like 12 [Setaria italica]
IRGSP Os07t0129700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 488 227 487 8e-88 72.7 39.3 43
Subject 355 82 354
Annot
Sbicolor Sobic.002G023900.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 488 226 487 5e-90 73 39.1 43.9
Subject 356 84 355
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g05830.1.am.mk length: 488 aa.
IPR001356 Homeobox domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 2.9e-12 389-454
ProfileScan PS50071 HOMEOBOX_2 13.151 387-450
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 1.4e-10 367-388
ProfileScan PS51213 ELK 11.505 367-387
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 6e-21 235-276
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 1.1e-20 287-334
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 1.6e-14 407-446
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1.4e-26 392-453
superfamily SSF46689 Homeodomain-like 2.5e-19 388-465
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 425-448
no_ID  
HMMPanther PTHR11850 HOMEOBOX 6.5e-53 90-455
HMMPanther PTHR11850:SF15 HOMEOBOX 6.5e-53 90-455
Seg seg seg NA 42-54
173-192
368-383
Pseudomolecule
Chromosome Start End Strand
219471031953673-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker_non_over exon 2731660 2732015 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:1
Zjn_sc00014.1 maker_non_over exon 2734301 2734372 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:2
Zjn_sc00014.1 maker_non_over exon 2734648 2734993 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:3
Zjn_sc00014.1 maker_non_over exon 2735096 2735215 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:4
Zjn_sc00014.1 maker_non_over exon 2735323 2735431 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:5
Zjn_sc00014.1 maker_non_over exon 2737644 2737894 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:6
Zjn_sc00014.1 maker_non_over exon 2738018 2738230 . + . ID=Zjn_sc00014.1.g05830.1.am.mk:exon:7

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