Z. japonica Nagirizaki
Zjn_sc00014.1.g05780.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G07960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 1 650 0.0 107.5 69.5 79.8
Subject 699 1 699
Annot | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699
NR ref|XP_002463822.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 1 650 0.0 106.2 91.5 96
Subject 690 1 690
Annot hypothetical protein SORBIDRAFT_01g006820 [Sorghum bicolor] gi|241917676|gb|EER90820.1| hypothetical protein SORBIDRAFT_01g006820 [Sorghum bicolor]
IRGSP Os03t0770800-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 97 650 0.0 91.7 76.2 80.5
Subject 596 5 596
Annot
Sbicolor Sobic.001G075600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 1 650 0.0 106.5 91.5 96
Subject 692 1 692
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g05780.1.sm.mkhc length: 650 aa.
no_ID  
method AccNumber shortName E-value location
Gene3D G3DSA:3.90.550.10 no description 2.2e-20 230-444
HMMPanther PTHR32044 FAMILY 0 70-650
HMMPanther PTHR32044:SF0 SUBFAMILY 0 70-650
HMMPfam PF13641 Glyco_tranf_2_3 1.2e-28 231-444
Seg seg seg NA 32-45
72-99
123-138
387-398
452-466
605-621
superfamily SSF53448 Nucleotide-diphospho-sugar 2.4e-40 226-495
Pseudomolecule
Chromosome Start End Strand
219769941980744+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 2704589 2705934 . - . ID=Zjn_sc00014.1.g05780.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 2706834 2707124 . - . ID=Zjn_sc00014.1.g05780.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 2707211 2707519 . - . ID=Zjn_sc00014.1.g05780.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 2707611 2708339 . - . ID=Zjn_sc00014.1.g05780.1.sm.mkhc:exon:1

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