Z. japonica Nagirizaki
Zjn_sc00014.1.g05300.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G27730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 404 172 400 3e-32 56.2 23.3 31.4
Subject 227 26 219
Annot | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227
NR gb|AIN39837.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 404 136 404 6e-95 64.9 51.7 55.4
Subject 262 1 262
Annot hypothetical protein [Zoysia matrella]
IRGSP Os03t0764100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 404 134 401 2e-76 66.6 45.3 50.7
Subject 269 1 267
Annot
Sbicolor Sobic.001G079500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 404 138 404 1e-88 72 46.5 51.7
Subject 291 2 291
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g05300.1.am.mk length: 404 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 227-247
301-321
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.058 225-252
299-321
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 0.043 225-247
299-321
no_ID  
HMMPanther PTHR26374 FAMILY 7.1e-37 188-392
HMMPanther PTHR26374:SF121SUBFAMILY NOT 7.1e-37 188-392
HMMPfam PF13912 zf-C2H2_6 1e-09 225-249
298-322
Seg seg seg NA 75-85
89-98
179-191
210-223
282-296
329-348
350-361
superfamily SSF57667 C2H2 1e-09 223-321
Pseudomolecule
Chromosome Start End Strand
221864242187807+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker_non_over exon 2497526 2498400 . - . ID=Zjn_sc00014.1.g05300.1.am.mk:exon:2
Zjn_sc00014.1 maker_non_over exon 2498570 2498909 . - . ID=Zjn_sc00014.1.g05300.1.am.mk:exon:1

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