Z. japonica Nagirizaki
Zjn_sc00014.1.g04600.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 185 1 180 2e-39 130.8 56.8 69.7
Subject 242 1 235
Annot | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
NR gb|AHM92070.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 185 1 185 1e-61 131.9 78.9 87.6
Subject 244 1 244
Annot MADS-box protein 14 [Phyllostachys edulis]
IRGSP Os03t0752800-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 185 1 185 1e-59 133 81.6 89.2
Subject 246 1 246
Annot
Sbicolor Sobic.001G086500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 185 1 185 4e-60 132.4 83.8 88.6
Subject 245 1 245
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g04600.1.sm.mkhc length: 185 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.1e-32 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.9e-29 9-59
HMMSmart SM00432 no description 6.6e-41 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 33.165 1-61
superfamily SSF55455 SRF-like 1e-29 2-96
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.3e-06 63-113
ProfileScan PS51297 K_BOX 7.393 40-129
no_ID  
Coil coil coiled-coil NA 77-122
HMMPanther PTHR11945 MADS 3.3e-51 1-139
HMMPanther PTHR11945:SF19 MADS 3.3e-51 1-139
Seg seg seg NA 108-124
133-139
Pseudomolecule
Chromosome Start End Strand
224817612488896-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 2196437 2196621 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:1
Zjn_sc00014.1 maker exon 2201224 2201287 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 2201473 2201514 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 2201625 2201666 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 2201777 2201898 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:5
Zjn_sc00014.1 maker exon 2202111 2203572 . + . ID=Zjn_sc00014.1.g04600.1.sm.mkhc:exon:6

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