Z. japonica Nagirizaki
Zjn_sc00014.1.g03780.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G04730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 10 226 1e-47 72.8 35.5 43.8
Subject 236 7 223
Annot | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236
NR ref|XP_004981820.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 226 2e-77 71.9 59 61.7
Subject 233 1 220
Annot PREDICTED: auxin-responsive protein IAA13 [Setaria italica]
IRGSP Os03t0742900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 226 7e-61 72.8 52.5 57.4
Subject 236 1 223
Annot
Sbicolor Sobic.001G094800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 226 3e-76 72.5 59 61.4
Subject 235 1 222
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g03780.1.sm.mkhc length: 324 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.6e-59 10-203
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 23.607 126-203
no_ID  
HMMPanther PTHR31734 FAMILY 7.3e-82 10-203
Seg seg seg NA 65-83
105-116
117-126
247-265
superfamily SSF54277 CAD 3.5e-17 113-203
Pseudomolecule
Chromosome Start End Strand
228110262814534+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 1870799 1871161 . - . ID=Zjn_sc00014.1.g03780.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 1872666 1872781 . - . ID=Zjn_sc00014.1.g03780.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 1872893 1873149 . - . ID=Zjn_sc00014.1.g03780.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 1874069 1874307 . - . ID=Zjn_sc00014.1.g03780.1.sm.mkhc:exon:1

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