Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00014.1.g03710.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00014.1)

BLAST

TAIR10	AT3G04670.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	381	1	377	3e-61	86.6	41.7	53
		Subject	330	1	324
		Annot	\| Symbols: WRKY39, ATWRKY39 \| WRKY DNA-binding protein 39 \| chr3:1266530-1267691 REVERSE LENGTH=330
NR	ref\|NP_001051223.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	381	1	380	e-159	101.6	80.8	87.7
		Subject	387	1	387
		Annot	Os03g0741400 [Oryza sativa Japonica Group] gi\|40539044\|gb\|AAR87301.1\| putative somatic embryogenesis related protein [Oryza sativa Japonica Group] gi\|108711002\|gb\|ABF98797.1\| WRKY DNA binding domain containing protein, expressed [Oryza sativa Japonica Group] gi\|113549694\|dbj\|BAF13137.1\| Os03g0741400 [Oryza sativa Japonica Group] gi\|215768455\|dbj\|BAH00684.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|323388851\|gb\|ADX60230.1\| WRKY transcription factor, partial [Oryza sativa Japonica Group]
IRGSP	Os03t0741400-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	381	1	380	e-162	101.6	80.8	87.7
		Subject	387	1	387
		Annot
Sbicolor	Sobic.001G095500.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	381	1	380	e-152	106.6	79.8	86.6
		Subject	406	6	406
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003657	DNA-binding WRKY
Zjn_sc00014.1.g03710.1.sm.mkhc				length: 381 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0043565	sequence-specific DNA binding
Gene3D	G3DSA:2.20.25.80	no description	4.6e-33	302-374
HMMPfam	PF03106	WRKY	7e-29	315-373
HMMSmart	SM00774	DNA	9.5e-39	314-374
ProfileScan	PS50811	WRKY	29.964	309-375
superfamily	SSF118290	WRKY	9.8e-26	305-376
IPR018872	Zn-cluster domain
HMMPfam	PF10533	Plant_zn_clust	1.4e-06	293-312
no_ID
HMMPanther	PTHR31282	FAMILY	8.5e-97	1-378
Seg	seg	seg	NA	85-95 156-176 205-223 236-251

Pseudomolecule

Chromosome	Start	End	Strand
2	2836728	2839287	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00014.1	maker	exon	1846046	1846923	.	+	.	ID=Zjn_sc00014.1.g03710.1.sm.mkhc:exon:1
Zjn_sc00014.1	maker	exon	1847045	1847170	.	+	.	ID=Zjn_sc00014.1.g03710.1.sm.mkhc:exon:2
Zjn_sc00014.1	maker	exon	1848182	1848605	.	+	.	ID=Zjn_sc00014.1.g03710.1.sm.mkhc:exon:3