Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00014.1.g03470.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00014.1)

BLAST

TAIR10	AT5G10860.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	49	253	6e-83	81.4	58.1	68.8
		Subject	206	1	206
		Annot	\| Symbols: \| Cystathionine beta-synthase (CBS) family protein \| chr5:3429173-3430142 REVERSE LENGTH=206
NR	gb\|AIN39814.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	49	253	e-115	81	80.2	80.6
		Subject	205	1	205
		Annot	hypothetical protein [Zoysia matrella]
IRGSP	Os03t0737000-03_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	48	253	e-104	81.8	70.8	76.7
		Subject	207	2	207
		Annot
Sbicolor	Sobic.001G098500.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	46	253	e-101	103.6	69.6	75.9
		Subject	262	55	262
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000644	CBS domain
Zjn_sc00014.1.g03470.1.sm.mkhc				length: 253 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0030554	adenyl nucleotide binding
HMMPfam	PF00571	CBS	3.1e-13	121-167 179-235
HMMSmart	SM00116	Domain	3.4e-08	118-168 188-235
ProfileScan	PS51371	CBS	13.864	115-174 183-241
no_ID
Gene3D	G3DSA:3.10.580.10	no description	6.4e-30	119-236
HMMPanther	PTHR11911	INOSINE-5-MONOPHOSPHATE	1.3e-63	96-253
HMMPanther	PTHR11911:SF11	SUBFAMILY	1.3e-63	96-253
Seg	seg	seg	NA	11-26 33-44
superfamily	SSF54631	CBS-domain	7.4e-10	175-243 113-176

Pseudomolecule

Chromosome	Start	End	Strand
2	2920464	2924563	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00014.1	maker	exon	1760770	1760863	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:8
Zjn_sc00014.1	maker	exon	1760884	1761270	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:7
Zjn_sc00014.1	maker	exon	1761362	1761422	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:6
Zjn_sc00014.1	maker	exon	1761511	1761584	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:5
Zjn_sc00014.1	maker	exon	1762217	1762298	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:4
Zjn_sc00014.1	maker	exon	1762404	1762667	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:3
Zjn_sc00014.1	maker	exon	1764672	1764778	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:2
Zjn_sc00014.1	maker	exon	1764839	1764869	.	-	.	ID=Zjn_sc00014.1.g03470.1.sm.mkhc:exon:1