Z. japonica Nagirizaki
Zjn_sc00014.1.g02960.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G22840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 1 404 4e-58 121 38.1 53
Subject 530 127 488
Annot | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530
NR ref|XP_004981896.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 1 437 0.0 134.7 82.6 92.5
Subject 590 139 582
Annot PREDICTED: growth-regulating factor 6-like [Setaria italica]
IRGSP Os03t0729500-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 1 437 e-180 104.1 76.5 87.2
Subject 456 5 448
Annot
Sbicolor Sobic.001G104500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 1 437 0.0 137.2 80.4 89.7
Subject 601 153 593
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g02960.1.sm.mkhc length: 438 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 2e-21 69-112
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 4.2e-15 6-42
HMMSmart SM00951 no description 5.2e-10 6-42
no_ID  
HMMPanther PTHR31602 FAMILY 2.5e-85 1-437
Seg seg seg NA 117-132
136-152
248-264
294-310
401-413
Pseudomolecule
Chromosome Start End Strand
231065403108452-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 1576881 1577040 . + . ID=Zjn_sc00014.1.g02960.1.sm.mkhc:exon:1
Zjn_sc00014.1 maker exon 1577181 1577547 . + . ID=Zjn_sc00014.1.g02960.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 1577794 1578574 . + . ID=Zjn_sc00014.1.g02960.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 1578785 1578793 . + . ID=Zjn_sc00014.1.g02960.1.sm.mkhc:exon:4

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