Z. japonica Nagirizaki
Zjn_sc00014.1.g02370.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G17330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
462 |
1 |
462 |
0.0 |
108.7 |
84 |
91.6 |
| Subject |
502 |
32 |
502 |
|
| Annot |
| Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 |
| NR |
ref|XP_004981955.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
462 |
1 |
462 |
0.0 |
106.7 |
94.6 |
97.4 |
| Subject |
493 |
32 |
493 |
|
| Annot |
PREDICTED: glutamate decarboxylase 1-like [Setaria italica] |
| IRGSP |
Os03t0720300-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
462 |
1 |
462 |
0.0 |
106.5 |
93.7 |
96.5 |
| Subject |
492 |
32 |
492 |
|
| Annot |
|
| Sbicolor |
Sobic.001G111000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
462 |
1 |
462 |
0.0 |
106.7 |
94.6 |
97.8 |
| Subject |
493 |
32 |
493 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00014.1.g02370.1.sm.mkhc |
length: 462 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
3.3e-105 |
7-350 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
7.3e-304 |
1-462 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
4.9e-205 |
1-413 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
9.5e-29 |
44-280 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
4.7e-127 |
1-417 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
7.3e-304 |
1-462 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 2 | 3480193 | 3482310 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00014.1 |
maker |
exon |
1203023 |
1203335 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:1 |
| Zjn_sc00014.1 |
maker |
exon |
1203507 |
1203707 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:2 |
| Zjn_sc00014.1 |
maker |
exon |
1203805 |
1204019 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:3 |
| Zjn_sc00014.1 |
maker |
exon |
1204149 |
1204402 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:4 |
| Zjn_sc00014.1 |
maker |
exon |
1204501 |
1204553 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:5 |
| Zjn_sc00014.1 |
maker |
exon |
1204660 |
1205140 |
. |
+ |
. |
ID=Zjn_sc00014.1.g02370.1.sm.mkhc:exon:6 |