Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00014.1.g01600.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00014.1)

BLAST

TAIR10	AT1G14920.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	616	24	614	0.0	86.5	54.1	64.9
		Subject	533	14	531
		Annot	\| Symbols: GAI, RGA2 \| GRAS family transcription factor family protein \| chr1:5149414-5151015 FORWARD LENGTH=533
NR	gb\|AFD62391.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	616	1	616	0.0	100.2	92.5	95.3
		Subject	617	1	617
		Annot	reduced height-2 [Eragrostis tef] gi\|380504014\|gb\|AFD62392.1\| reduced height-2 [Eragrostis tef] gi\|380504016\|gb\|AFD62393.1\| reduced height-2 [Eragrostis tef] gi\|380504018\|gb\|AFD62394.1\| reduced height-2 [Eragrostis tef] gi\|380504020\|gb\|AFD62395.1\| reduced height-2 [Eragrostis tef]
IRGSP	Os03t0707600-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	616	1	616	0.0	101.5	85.7	91.2
		Subject	625	1	625
		Annot
Sbicolor	Sobic.001G120900.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	616	1	615	0.0	101.8	86.5	90.9
		Subject	627	1	626
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR005202	Transcription factor GRAS
Zjn_sc00014.1.g01600.1.am.mk				length: 616 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF03514	GRAS	3.7e-140	233-612
ProfileScan	PS50985	GRAS	67.926	207-591
IPR021914	Transcriptional factor DELLA, N-terminal
HMMPfam	PF12041	DELLA	7.5e-34	38-108
no_ID
HMMPanther	PTHR31636	FAMILY	3.1e-166	207-616
Seg	seg	seg	NA	7-24 107-136 180-202 203-224 291-309 511-517

Pseudomolecule

Chromosome	Start	End	Strand
2	3868651	3870501	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00014.1	maker_non_over	exon	814832	816682	.	+	.	ID=Zjn_sc00014.1.g01600.1.am.mk:exon:1