Z. japonica Nagirizaki
Zjn_sc00014.1.g00450.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G21175.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 27 238 3e-52 117.1 46 54.4
Subject 295 40 260
Annot | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295
NR ref|XP_002464073.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 45 244 2e-89 120.2 65.9 70.2
Subject 303 57 263
Annot hypothetical protein SORBIDRAFT_01g011840 [Sorghum bicolor] gi|241917927|gb|EER91071.1| hypothetical protein SORBIDRAFT_01g011840 [Sorghum bicolor]
IRGSP Os03t0684000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 48 240 9e-88 126.6 63.1 69
Subject 319 60 260
Annot
Sbicolor Sobic.001G135400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 45 244 2e-92 120.2 65.9 70.2
Subject 303 57 263
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00014.1.g00450.1.sm.mkhc length: 252 aa.
IPR000679 Zinc finger, GATA-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00320 GATA 2.9e-14 195-231
HMMSmart SM00401 zinc 1.3e-08 189-242
PatternScan PS00344 GATA_ZN_FINGER_1 NA 195-222
ProfileScan PS50114 GATA_ZN_FINGER_2 8.827 194-246
IPR010399 Tify
HMMPfam PF06200 tify 7.3e-11 65-95
HMMSmart SM00979 no description 1.4e-08 61-96
ProfileScan PS51320 TIFY 13.875 61-96
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 2.2e-17 123-165
ProfileScan PS51017 CCT 13.255 123-165
IPR013088 Zinc finger, NHR/GATA-type
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:3.30.50.10 no description 1.2e-12 194-233
no_ID  
HMMPanther PTHR10071 TRANSCRIPTION 6e-19 103-233
HMMPanther PTHR10071:SF128SUBFAMILY NOT 6e-19 103-233
Seg seg seg NA 1-16
18-57
91-103
superfamily SSF57716 Glucocorticoid 3.2e-11 189-246
Pseudomolecule
Chromosome Start End Strand
244905114501247+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00014.1 maker exon 184086 184127 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:7
Zjn_sc00014.1 maker exon 191031 191060 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:6
Zjn_sc00014.1 maker exon 191884 191989 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:5
Zjn_sc00014.1 maker exon 192086 192205 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:4
Zjn_sc00014.1 maker exon 193180 193295 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:3
Zjn_sc00014.1 maker exon 193392 193478 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:2
Zjn_sc00014.1 maker exon 194565 194822 . - . ID=Zjn_sc00014.1.g00450.1.sm.mkhc:exon:1

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