Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00013.1.g10220.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00013.1)

BLAST

TAIR10	AT5G48840.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	309	6	308	e-110	100.3	64.7	75.1
		Subject	310	2	309
		Annot	\| Symbols: PANC, PTS, ATPTS \| homolog of bacterial PANC \| chr5:19803823-19805041 REVERSE LENGTH=310
NR	ref\|XP_002466086.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	309	2	309	e-146	101.9	83.5	90.3
		Subject	315	3	312
		Annot	hypothetical protein SORBIDRAFT_01g000970 [Sorghum bicolor] gi\|241919940\|gb\|EER93084.1\| hypothetical protein SORBIDRAFT_01g000970 [Sorghum bicolor]
IRGSP	Os03t0851800-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	309	1	309	e-142	101.3	81.2	90.3
		Subject	313	1	313
		Annot
Sbicolor	Sobic.001G009900.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	309	2	296	e-142	108.4	79.9	86.1
		Subject	335	3	299
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003721	Pantoate-beta-alanine ligase
Zjn_sc00013.1.g10220.1.am.mkhc				length: 309 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004592	pantoate-beta-alanine ligase activity
Biological Process	GO:0015940	pantothenate biosynthetic process
HAMAP	MF_00158	PanC	31.663	8-305
HMMPanther	PTHR21299:SF1	PANTOATE-BETA-ALANINE	2e-122	8-309
HMMPfam	PF02569	Pantoate_ligase	6.8e-54	9-103 133-305
HMMTigr	TIGR00018	panC:	1.1e-77	9-305
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
Gene3D	G3DSA:3.40.50.620	no description	2.7e-57	5-199
no_ID
Gene3D	G3DSA:3.30.1300.10	no description	8.8e-32	205-306
HMMPanther	PTHR21299	CYTIDYLATE	2e-122	8-309
Seg	seg	seg	NA	14-25 47-63 109-123
superfamily	SSF52374	Nucleotidylyl	1.1e-81	7-307

Pseudomolecule

Chromosome	Start	End	Strand
1	244416	246699	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00013.1	maker	exon	4596008	4596568	.	+	.	ID=Zjn_sc00013.1.g10220.1.am.mkhc:exon:1
Zjn_sc00013.1	maker	exon	4596941	4597054	.	+	.	ID=Zjn_sc00013.1.g10220.1.am.mkhc:exon:2
Zjn_sc00013.1	maker	exon	4597574	4597705	.	+	.	ID=Zjn_sc00013.1.g10220.1.am.mkhc:exon:3
Zjn_sc00013.1	maker	exon	4597793	4598291	.	+	.	ID=Zjn_sc00013.1.g10220.1.am.mkhc:exon:4