Z. japonica Nagirizaki
Zjn_sc00013.1.g09580.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G64740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1116 1 1115 0.0 97.1 69.9 81.8
Subject 1084 1 1083
Annot | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084
NR ref|XP_004981133.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1116 1 1116 0.0 97.7 93.8 95.9
Subject 1090 1 1090
Annot PREDICTED: probable cellulose synthase A catalytic subunit 5 [UDP-forming] [Setaria italica]
IRGSP Os03t0837100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1116 1 1116 0.0 97.8 93.1 94.9
Subject 1092 1 1092
Annot
Sbicolor Sobic.001G021500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1116 1 1116 0.0 97.7 93.6 95.5
Subject 1090 1 1090
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g09580.1.sm.mkhc length: 1116 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.580 39-85
IPR005150 Cellulose synthase
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 380-1108
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.2e-27 24-140
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 6.5e-33 28-94
no_ID  
Coil coil coiled-coil NA 478-499
HMMPanther PTHR13301 X-BOX 0 16-1115
HMMPanther PTHR13301:SF21 CELLULOSE 0 16-1115
Seg seg seg NA 127-139
171-184
265-275
683-695
700-716
1011-1023
superfamily SSF53448 Nucleotide-diphospho-sugar 2.5e-07 379-870
superfamily SSF57850 RING/U-box 1.3e-32 21-93
Pseudomolecule
Chromosome Start End Strand
1487337492496-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 4350211 4350291 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 4350388 4350664 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 4350675 4350883 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 4350985 4351087 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 4351171 4351333 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 4351444 4351710 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 4351790 4352135 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 4352227 4352364 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 4352483 4352608 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 4352705 4352917 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 4353011 4353305 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 4353410 4353606 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 4353691 4354041 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 4354138 4355370 . + . ID=Zjn_sc00013.1.g09580.1.sm.mkhc:exon:14

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