Z. japonica Nagirizaki
Zjn_sc00013.1.g09160.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G26680.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 131 1 108 7e-24 292.4 54.2 67.9
Subject 383 1 170
Annot | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383
NR ref|XP_012704266.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 131 1 109 1e-34 262.6 71 78.6
Subject 344 1 171
Annot PREDICTED: flap endonuclease 1-B isoform X2 [Setaria italica]
IRGSP Os03t0834000-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 131 1 109 6e-37 191.6 69.5 75.6
Subject 251 1 171
Annot
Sbicolor Sobic.001G027100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 131 1 109 5e-38 313.7 71 77.9
Subject 411 1 171
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g09160.1.sm.mkhc length: 131 aa.
IPR006084 XPG/Rad2 endonuclease
method AccNumber shortName E-value location
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00853 XPGRADSUPER 3e-06 28-42
84-101
HMMPanther PTHR11081 XP-G/RAD2 2.9e-21 1-112
IPR006085 XPG N-terminal
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
HMMPfam PF00752 XPG_N 1.2e-10 1-56
HMMSmart SM00485 Xeroderma 2.2e-05 1-94
IPR006086 XPG-I domain
Molecular Function GO:0004518 nuclease activity    
HMMPfam PF00867 XPG_I 1.2e-05 90-111
no_ID  
Gene3D G3DSA:3.40.50.1010 no description 0.00017 1-64
86-111
HMMPanther PTHR11081:SF9 FLAP 2.9e-21 1-112
superfamily SSF88723 PIN 5.1e-14 2-112
Pseudomolecule
Chromosome Start End Strand
1621318628740+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 4213967 4214982 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 4215623 4215669 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 4219051 4219101 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 4219880 4219945 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 4220679 4220762 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 4221154 4221270 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 4221378 4221389 . - . ID=Zjn_sc00013.1.g09160.1.sm.mkhc:exon:1

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