Z. japonica Nagirizaki
Zjn_sc00013.1.g09000.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G09090.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 837 28 201 2e-81 97.6 16.4 18.8
Subject 817 26 199
Annot | Symbols: DEX1 | defective in exine formation protein (DEX1) | chr3:2783165-2787552 REVERSE LENGTH=817
NR ref|XP_004981208.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 837 19 829 0.0 100.1 80.2 85.5
Subject 838 24 809
Annot PREDICTED: protein DEFECTIVE IN EXINE FORMATION 1 [Setaria italica]
IRGSP Os03t0825700-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 837 28 829 0.0 101.7 77.2 84.7
Subject 851 29 822
Annot
Sbicolor Sobic.001G030000.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 837 28 822 0.0 100.2 79.6 84.3
Subject 839 30 803
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g09000.1.sm.mkhc length: 837 aa.
IPR013517 FG-GAP repeat
method AccNumber shortName E-value location
HMMPfam PF01839 FG-GAP 2.8e-05 561-586
IPR027295 Quinonprotein alcohol dehydrogenase-like domain
Gene3D G3DSA:2.140.10.10 no description 9e-19 442-644
no_ID  
Seg seg seg NA 5-20
350-368
374-385
superfamily SSF69318 Integrin 1.9e-41 49-614
Pseudomolecule
Chromosome Start End Strand
1687815696136-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 4146571 4146704 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 4147768 4147878 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 4148148 4148230 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 4148460 4148577 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 4148648 4148933 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 4149144 4149605 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 4149691 4149761 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 4150120 4150376 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 4151256 4151410 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 4151822 4152105 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 4152221 4152338 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 4152669 4152851 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 4152942 4153163 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 4154863 4154892 . + . ID=Zjn_sc00013.1.g09000.1.sm.mkhc:exon:14

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