Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00013.1.g08880.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00013.1)

BLAST

TAIR10	AT5G62570.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	474	80	279	4e-39	104.2	21.5	29.1
		Subject	494	14	284
		Annot	\| Symbols: \| Calmodulin binding protein-like \| chr5:25114934-25116967 FORWARD LENGTH=494
NR	ref\|NP_001050439.2\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	474	33	474	e-165	120.7	69	78.3
		Subject	572	1	572
		Annot	Os03g0436300 [Oryza sativa Japonica Group] gi\|108709011\|gb\|ABF96806.1\| calmodulin-binding protein, putative, expressed [Oryza sativa Japonica Group] gi\|222625195\|gb\|EEE59327.1\| hypothetical protein OsJ_11391 [Oryza sativa Japonica Group] gi\|255674620\|dbj\|BAF12353.2\| Os03g0436300 [Oryza sativa Japonica Group]
IRGSP	Os03t0436300-00_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	474	18	474	e-164	132.7	69.2	79.1
		Subject	629	47	629
		Annot
Sbicolor	Sobic.001G031600.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	474	33	474	e-148	120.3	65.8	74.9
		Subject	570	1	570
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR012416	Calmodulin binding protein-like
Zjn_sc00013.1.g08880.1.am.mkhc				length: 474 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF07887	Calmodulin_bind	4e-28	135-213 213-280
no_ID
HMMPanther	PTHR31713	FAMILY	5.8e-69	18-280
HMMPanther	PTHR31713:SF0	SUBFAMILY	5.8e-69	18-280
Seg	seg	seg	NA	7-30 40-61

Pseudomolecule

Chromosome	Start	End	Strand
1	730495	734459	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00013.1	maker	exon	4108248	4109381	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:7
Zjn_sc00013.1	maker	exon	4109643	4109678	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:6
Zjn_sc00013.1	maker	exon	4110154	4110314	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:5
Zjn_sc00013.1	maker	exon	4111021	4111295	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:4
Zjn_sc00013.1	maker	exon	4111384	4111436	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:3
Zjn_sc00013.1	maker	exon	4111781	4111856	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:2
Zjn_sc00013.1	maker	exon	4111977	4112212	.	-	.	ID=Zjn_sc00013.1.g08880.1.am.mkhc:exon:1