Z. japonica Nagirizaki
Zjn_sc00013.1.g07850.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G05170.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1057 1 1057 0.0 100.8 78.9 86.8
Subject 1065 1 1065
Annot | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065
NR ref|XP_004981340.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1057 1 1057 0.0 102.1 95.9 97.5
Subject 1079 1 1079
Annot PREDICTED: probable cellulose synthase A catalytic subunit 2 [UDP-forming] [Setaria italica]
IRGSP Os03t0808100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1057 6 1057 0.0 101.5 93.4 96.2
Subject 1073 2 1073
Annot
Sbicolor Sobic.001G045700.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1057 10 1057 0.0 102.2 93.6 95.9
Subject 1080 13 1080
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g07850.1.sm.mkhc length: 1057 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.535 19-65
IPR005150 Cellulose synthase
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 353-1051
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 4.9e-28 7-89
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 2.2e-36 12-87
no_ID  
Coil coil coiled-coil NA 451-472
HMMPanther PTHR13301 X-BOX 0 1-1057
HMMPanther PTHR13301:SF21 CELLULOSE 0 1-1057
Seg seg seg NA 642-664
953-967
superfamily SSF53448 Nucleotide-diphospho-sugar 2.7e-09 352-836
superfamily SSF57850 RING/U-box 6.2e-39 1-93
Pseudomolecule
Chromosome Start End Strand
111176131123065+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 3719642 3720450 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:14
Zjn_sc00013.1 maker exon 3720533 3720883 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 3721051 3721253 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 3721426 3721681 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 3721783 3721995 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 3722078 3722203 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 3722622 3722696 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 3722784 3723129 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 3723210 3723476 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 3723723 3723909 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 3723998 3724097 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 3724187 3724434 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 3724752 3724944 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 3725071 3725094 . - . ID=Zjn_sc00013.1.g07850.1.sm.mkhc:exon:1

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