Z. japonica Nagirizaki
Zjn_sc00013.1.g07580.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G34640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 468 4 384 e-135 87.6 51.3 62.8
Subject 410 8 393
Annot | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410
NR ref|NP_001104839.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 468 1 384 e-175 85.7 66.2 72
Subject 401 1 386
Annot squalene synthase1 [Zea mays] gi|2463567|dbj|BAA22558.1| squalene synthase [Zea mays] gi|224031363|gb|ACN34757.1| unknown [Zea mays] gi|413932747|gb|AFW67298.1| Squalene synthase isoform 1 [Zea mays] gi|413932748|gb|AFW67299.1| Squalene synthase isoform 2 [Zea mays]
IRGSP Os03t0805100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 468 1 384 e-175 86.1 65.6 70.9
Subject 403 1 386
Annot
Sbicolor Sobic.001G049600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 468 1 384 e-180 86.1 66.9 71.8
Subject 403 1 386
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g07580.1.am.mkhc length: 468 aa.
IPR002060 Squalene/phytoene synthase
method AccNumber shortName E-value location
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0016740 transferase activity    
HMMPfam PF00494 SQS_PSY 1.1e-16 94-235
IPR008949 Terpenoid synthase
Gene3D G3DSA:1.10.600.10 no description 3.5e-28 26-62
95-235
236-361
superfamily SSF48576 Terpenoid 4e-07 95-361
31-64
IPR019845 Squalene/phytoene synthase, conserved site
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups    
PatternScan PS01044 SQUALEN_PHYTOEN_SYN_1 NA 197-212
no_ID  
HMMPanther PTHR11626 FARNESYL-DIPHOSPHATE 1.3e-144 1-384
HMMPanther PTHR11626:SF0 SUBFAMILY 1.3e-144 1-384
Pseudomolecule
Chromosome Start End Strand
112185831224484-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 3618223 3618504 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:1
Zjn_sc00013.1 maker exon 3618558 3618600 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:2
Zjn_sc00013.1 maker exon 3618783 3618872 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:3
Zjn_sc00013.1 maker exon 3618988 3619063 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:4
Zjn_sc00013.1 maker exon 3619511 3619580 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:5
Zjn_sc00013.1 maker exon 3620404 3620547 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:6
Zjn_sc00013.1 maker exon 3621037 3621183 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:7
Zjn_sc00013.1 maker exon 3621718 3621793 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:8
Zjn_sc00013.1 maker exon 3622689 3622777 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:9
Zjn_sc00013.1 maker exon 3623188 3623279 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:10
Zjn_sc00013.1 maker exon 3623353 3623396 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:11
Zjn_sc00013.1 maker exon 3623526 3623665 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:12
Zjn_sc00013.1 maker exon 3623725 3624124 . + . ID=Zjn_sc00013.1.g07580.1.am.mkhc:exon:13

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