Z. japonica Nagirizaki
Zjn_sc00013.1.g07140.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02610.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 70 314 5e-88 87.6 48.1 63.1
Subject 275 13 275
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:1147662-1149217 FORWARD LENGTH=275
NR ref|XP_002463738.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 1 313 e-120 103.8 73.9 83.8
Subject 326 1 324
Annot hypothetical protein SORBIDRAFT_01g005150 [Sorghum bicolor] gi|241917592|gb|EER90736.1| hypothetical protein SORBIDRAFT_01g005150 [Sorghum bicolor]
IRGSP Os03t0797400-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 35 313 e-103 103.2 60.8 71.3
Subject 324 30 324
Annot
Sbicolor Sobic.001G056500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 1 313 e-123 103.8 73.9 83.8
Subject 326 1 324
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g07140.1.sm.mkhc length: 314 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HAMAP MF_00131 Trp_synth_alpha 29.683 80-311
HMMPfam PF00290 Trp_syntA 2.6e-82 74-290
HMMTigr TIGR00262 trpA: 1.6e-74 76-292
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 9.9e-76 67-313
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.8e-86 70-290
IPR018204 Tryptophan synthase, alpha chain, active site
Molecular Function GO:0004834 tryptophan synthase activity    
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 114-127
no_ID  
Coil coil coiled-coil NA 251-272
HMMPanther PTHR10314 SER/THR 5.5e-85 70-234
HMMPanther PTHR10314:SF4 TRYTOPHAN 5.5e-85 70-234
Seg seg seg NA 10-23
39-65
177-186
Pseudomolecule
Chromosome Start End Strand
114210331423137+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 3419570 3419653 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 3420066 3420125 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 3420278 3420433 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 3420541 3420617 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 3420726 3421047 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 3421164 3421674 . - . ID=Zjn_sc00013.1.g07140.1.sm.mkhc:exon:1

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