Z. japonica Nagirizaki
Zjn_sc00013.1.g06780.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G27740.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
281 |
1 |
247 |
e-119 |
126 |
68.7 |
81.1 |
| Subject |
354 |
1 |
256 |
|
| Annot |
| Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354 |
| NR |
gb|ACG32363.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
281 |
1 |
247 |
e-137 |
126 |
84.7 |
86.5 |
| Subject |
354 |
1 |
256 |
|
| Annot |
replication factor C subunit 5 [Zea mays] |
| IRGSP |
Os03t0792600-02_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
281 |
1 |
247 |
e-138 |
126 |
82.6 |
86.8 |
| Subject |
354 |
1 |
256 |
|
| Annot |
|
| Sbicolor |
Sobic.001G061800.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
281 |
1 |
247 |
e-141 |
126 |
85.1 |
87.2 |
| Subject |
354 |
1 |
256 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00013.1.g06780.1.sm.mkhc |
length: 281 aa. |
| IPR003593 |
AAA+ ATPase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
7.6e-07 |
33-192 |
| IPR008921 |
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| superfamily |
SSF48019 |
DNA |
4.7e-10 |
247-273 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
8.6e-39 |
3-231 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.8.60 |
no description |
4.3e-12 |
191-230 |
| Gene3D |
G3DSA:1.20.272.10 |
no description |
2.8e-09 |
246-273 |
| Gene3D |
G3DSA:3.40.50.300 |
no description |
5e-52 |
2-188 |
| HMMPanther |
PTHR11669 |
REPLICATION |
3.7e-86 |
1-231 |
| HMMPfam |
PF13177 |
DNA_pol3_delta2 |
2.1e-11 |
19-187 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 1550961 | 1558142 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00013.1 |
maker |
exon |
3284565 |
3284801 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:1 |
| Zjn_sc00013.1 |
maker |
exon |
3284941 |
3285051 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:2 |
| Zjn_sc00013.1 |
maker |
exon |
3285163 |
3285195 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:3 |
| Zjn_sc00013.1 |
maker |
exon |
3285529 |
3285697 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:4 |
| Zjn_sc00013.1 |
maker |
exon |
3286004 |
3286185 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:5 |
| Zjn_sc00013.1 |
maker |
exon |
3286698 |
3286807 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:6 |
| Zjn_sc00013.1 |
maker |
exon |
3286957 |
3287008 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:7 |
| Zjn_sc00013.1 |
maker |
exon |
3287636 |
3287681 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:8 |
| Zjn_sc00013.1 |
maker |
exon |
3288565 |
3289225 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:9 |
| Zjn_sc00013.1 |
maker |
exon |
3289908 |
3290185 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:10 |
| Zjn_sc00013.1 |
maker |
exon |
3290282 |
3290650 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:11 |
| Zjn_sc00013.1 |
maker |
exon |
3291696 |
3291746 |
. |
+ |
. |
ID=Zjn_sc00013.1.g06780.1.sm.mkhc:exon:12 |