Z. japonica Nagirizaki
Zjn_sc00013.1.g06370.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G14415.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 418 3 418 e-177 87.8 75.4 82.8
Subject 367 2 367
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr3:4818667-4820748 FORWARD LENGTH=367
NR ref|XP_002466341.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 418 1 418 0.0 88 84.9 86.8
Subject 368 1 368
Annot hypothetical protein SORBIDRAFT_01g005960 [Sorghum bicolor] gi|241920195|gb|EER93339.1| hypothetical protein SORBIDRAFT_01g005960 [Sorghum bicolor]
IRGSP Os03t0786100-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 418 1 418 0.0 88.3 81.3 85.2
Subject 369 1 369
Annot
Sbicolor Sobic.001G065600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 418 1 418 0.0 88 84.9 86.8
Subject 368 1 368
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g06370.1.sm.mkhc length: 418 aa.
IPR000262 FMN-dependent dehydrogenase
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
HMMPfam PF01070 FMN_dh 6.3e-14 14-340
357-405
IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00557 FMN_HYDROXY_ACID_DH_1 NA 283-289
IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent
Molecular Function GO:0010181 FMN binding    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000138 Alpha-hydroxy 1.4e-166 1-416
ProfileScan PS51349 FMN_HYDROXY_ACID_DH_2 109.526 1-410
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.3e-15 232-341
357-408
no_ID  
HMMPanther PTHR10578 (S)-2-HYDROXY-ACID 3.2e-175 1-417
HMMPanther PTHR10578:SF9 (S)-2-HYDROXY-ACID 3.2e-175 1-417
Seg seg seg NA 92-100
superfamily SSF51395 FMN-linked 9.5e-103 2-410
Pseudomolecule
Chromosome Start End Strand
117097311713348-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 3129359 3129778 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 3130749 3130921 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 3131033 3131157 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 3131292 3131338 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 3131434 3131511 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 3131623 3131837 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 3131869 3131935 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 3132034 3132096 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 3132221 3132290 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 3132390 3132490 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 3132595 3132759 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 3132791 3132976 . + . ID=Zjn_sc00013.1.g06370.1.sm.mkhc:exon:12

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