Z. japonica Nagirizaki
Zjn_sc00013.1.g04660.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G39040.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 147 240 3e-43 197.5 23.6 26.7
Subject 644 416 509
Annot | Symbols: ALS1, ATTAP2, TAP2 | transporter associated with antigen processing protein 2 | chr5:15625660-15629621 FORWARD LENGTH=644
NR ref|XP_002324121.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 147 303 3e-49 197.9 35.3 40.8
Subject 645 419 641
Annot hypothetical protein POPTR_0017s13110g [Populus trichocarpa] gi|550320188|gb|EEF04254.2| hypothetical protein POPTR_0017s13110g [Populus trichocarpa]
IRGSP Os03t0755100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 147 240 6e-47 196.6 27 27.6
Subject 641 400 493
Annot
Sbicolor Sobic.001G085600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 1 109 7e-49 198.8 28.8 31
Subject 648 1 110
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g04660.1.sm.mkhc length: 326 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 5.8e-07 60-149
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 2.7e-17 148-247
ProfileScan PS50893 ABC_TRANSPORTER_2 9.611 123-298
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 0.0018 109-154
45-86
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.1e-36 147-288
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 8.2e-06 109-152
Gene3D G3DSA:3.40.50.300 no description 2e-14 153-239
240-300
HMMPanther PTHR24221 FAMILY 3.9e-126 14-300
HMMPanther PTHR24221:SF48 SUBFAMILY 3.9e-126 14-300
Pseudomolecule
Chromosome Start End Strand
124216242427305-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 2415402 2415464 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 2415575 2415622 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 2415774 2415809 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 2415897 2415971 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 2416316 2416420 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 2417532 2417642 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 2419032 2419097 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 2419203 2419310 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 2419819 2419926 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 2420350 2421083 . + . ID=Zjn_sc00013.1.g04660.1.sm.mkhc:exon:10

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