Z. japonica Nagirizaki
Zjn_sc00013.1.g04580.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 164 3e-44 143.2 63.3 79.3
Subject 242 1 235
Annot | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
NR gb|ADA72020.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 2e-54 144.4 83.4 89.9
Subject 244 1 244
Annot MADS1 protein [Fargesia nitida]
IRGSP Os03t0752800-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 2e-52 145.6 85.2 92.3
Subject 246 1 246
Annot
Sbicolor Sobic.001G086500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 2e-54 145 82.8 89.3
Subject 245 1 245
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g04580.1.sm.mk length: 169 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.8e-32 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 3.6e-29 9-59
HMMSmart SM00432 no description 5.2e-41 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 33.207 1-61
superfamily SSF55455 SRF-like 3.2e-30 2-94
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.6e-19 63-123
ProfileScan PS51297 K_BOX 12.357 40-130
no_ID  
Coil coil coiled-coil NA 74-98
103-134
HMMPanther PTHR11945 MADS 4.7e-59 1-155
HMMPanther PTHR11945:SF19 MADS 4.7e-59 1-155
Seg seg seg NA 67-85
113-132
Pseudomolecule
Chromosome Start End Strand
124687802474535+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker_non_over exon 2368172 2368260 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:6
Zjn_sc00013.1 maker_non_over exon 2368553 2368619 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:5
Zjn_sc00013.1 maker_non_over exon 2368735 2368761 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:4
Zjn_sc00013.1 maker_non_over exon 2368896 2368937 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:3
Zjn_sc00013.1 maker_non_over exon 2369061 2369160 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:2
Zjn_sc00013.1 maker_non_over exon 2373743 2373927 . - . ID=Zjn_sc00013.1.g04580.1.sm.mk:exon:1

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