Z. japonica Nagirizaki
Zjn_sc00013.1.g04550.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G35840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 745 13 675 0.0 149.1 54.6 68.7
Subject 1111 6 649
Annot | Symbols: PHYC | phytochrome C | chr5:14008049-14011619 FORWARD LENGTH=1111
NR ref|XP_004981744.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 745 1 683 0.0 152.3 77.4 81.5
Subject 1135 1 671
Annot PREDICTED: LOW QUALITY PROTEIN: phytochrome C [Setaria italica]
IRGSP Os03t0309200-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 745 19 682 0.0 150.3 51.5 66
Subject 1120 5 662
Annot
Sbicolor Sobic.001G087100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 745 3 678 0.0 152.3 74.1 79.7
Subject 1135 2 666
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g04550.1.sm.mkhc length: 745 aa.
IPR000014 PAS domain
method AccNumber shortName E-value location
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
ProfileScan PS50112 PAS 10.940 627-682
superfamily SSF55785 PYP-like 6.3e-06 613-675
IPR001294 Phytochrome
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
FPrintScan PR01033 PHYTOCHROME 5.6e-70 132-154
232-251
317-338
430-450
515-534
549-567
652-667
IPR003018 GAF domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF01590 GAF 4.9e-40 218-399
HMMSmart SM00065 Domain 7.4e-13 217-410
IPR013515 Phytochrome, central region
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
Biological Process GO:0018298 protein-chromophore linkage    
HMMPfam PF00360 PHY 1.4e-75 411-589
IPR013516 Phytochrome chromophore binding site
Biological Process GO:0018298 protein-chromophore linkage    
PatternScan PS00245 PHYTOCHROME_1 NA 317-326
IPR013654 PAS fold-2
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF08446 PAS_2 7.7e-40 68-184
IPR013767 PAS fold
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00989 PAS 3.8e-12 630-741
IPR016132 Phytochrome chromophore attachment domain
Biological Process GO:0018298 protein-chromophore linkage    
ProfileScan PS50046 PHYTOCHROME_2 65.971 217-390
no_ID  
Seg seg seg NA 13-28
superfamily SSF55781 GAF 7.7e-07 217-410
Pseudomolecule
Chromosome Start End Strand
124869052492086-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 2350621 2352410 . + . ID=Zjn_sc00013.1.g04550.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 2352882 2353315 . + . ID=Zjn_sc00013.1.g04550.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 2353972 2354265 . + . ID=Zjn_sc00013.1.g04550.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 2355317 2355802 . + . ID=Zjn_sc00013.1.g04550.1.sm.mkhc:exon:4

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