Z. japonica Nagirizaki
Zjn_sc00013.1.g03980.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G04730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 10 235 3e-65 100.4 57.9 68.9
Subject 236 7 236
Annot | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236
NR ref|XP_004981820.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 1 235 2e-97 99.1 91.9 93.6
Subject 233 1 233
Annot PREDICTED: auxin-responsive protein IAA13 [Setaria italica]
IRGSP Os03t0742900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 1 235 3e-76 100.4 79.6 86
Subject 236 1 236
Annot
Sbicolor Sobic.001G094800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 235 1 235 6e-92 100 91.5 92.8
Subject 235 1 235
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g03980.1.sm.mkhc length: 235 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.5e-74 10-226
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 30.771 126-218
no_ID  
HMMPanther PTHR31734 FAMILY 4.9e-106 10-235
Seg seg seg NA 53-83
104-117
superfamily SSF54277 CAD 4.7e-24 113-216
Pseudomolecule
Chromosome Start End Strand
127278512729998+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 2112709 2113099 . - . ID=Zjn_sc00013.1.g03980.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 2113188 2113249 . - . ID=Zjn_sc00013.1.g03980.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 2113335 2113446 . - . ID=Zjn_sc00013.1.g03980.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 2113568 2113824 . - . ID=Zjn_sc00013.1.g03980.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 2114618 2114856 . - . ID=Zjn_sc00013.1.g03980.1.sm.mkhc:exon:1

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