Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00013.1.g03890.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00013.1)

BLAST

TAIR10	AT5G28650.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	392	6	392	2e-64	84.2	42.6	55.6
		Subject	330	1	328
		Annot	\| Symbols: WRKY74, ATWRKY74 \| WRKY DNA-binding protein 74 \| chr5:10677790-10678945 REVERSE LENGTH=330
NR	ref\|NP_001051223.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	392	6	391	e-164	98.7	79.8	87
		Subject	387	1	387
		Annot	Os03g0741400 [Oryza sativa Japonica Group] gi\|40539044\|gb\|AAR87301.1\| putative somatic embryogenesis related protein [Oryza sativa Japonica Group] gi\|108711002\|gb\|ABF98797.1\| WRKY DNA binding domain containing protein, expressed [Oryza sativa Japonica Group] gi\|113549694\|dbj\|BAF13137.1\| Os03g0741400 [Oryza sativa Japonica Group] gi\|215768455\|dbj\|BAH00684.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|323388851\|gb\|ADX60230.1\| WRKY transcription factor, partial [Oryza sativa Japonica Group]
IRGSP	Os03t0741400-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	392	6	391	e-167	98.7	79.8	87
		Subject	387	1	387
		Annot
Sbicolor	Sobic.001G095500.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	392	1	391	e-156	103.6	78.3	85.5
		Subject	406	1	406
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003657	DNA-binding WRKY
Zjn_sc00013.1.g03890.1.sm.mkhc				length: 392 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0043565	sequence-specific DNA binding
Gene3D	G3DSA:2.20.25.80	no description	7.3e-33	313-384
HMMPfam	PF03106	WRKY	8.7e-29	326-384
HMMSmart	SM00774	DNA	2.5e-38	325-385
ProfileScan	PS50811	WRKY	29.987	320-386
superfamily	SSF118290	WRKY	1.2e-25	316-387
IPR018872	Zn-cluster domain
HMMPfam	PF10533	Plant_zn_clust	2.1e-14	281-323
no_ID
HMMPanther	PTHR31282	FAMILY	8.7e-102	7-389
Seg	seg	seg	NA	90-96 115-126 161-176 204-223 236-257 302-313

Pseudomolecule

Chromosome	Start	End	Strand
1	2768161	2770144	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00013.1	maker	exon	2072563	2073473	.	+	.	ID=Zjn_sc00013.1.g03890.1.sm.mkhc:exon:1
Zjn_sc00013.1	maker	exon	2073568	2073693	.	+	.	ID=Zjn_sc00013.1.g03890.1.sm.mkhc:exon:2
Zjn_sc00013.1	maker	exon	2074405	2074546	.	+	.	ID=Zjn_sc00013.1.g03890.1.sm.mkhc:exon:3