Z. japonica Nagirizaki
Zjn_sc00013.1.g03810.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37930.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 461 0.0 112.1 86.8 93.5
Subject 517 1 517
Annot | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517
NR ref|XP_008810278.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 460 0.0 112.4 87.2 93.5
Subject 518 1 517
Annot PREDICTED: serine hydroxymethyltransferase, mitochondrial [Phoenix dactylifera]
IRGSP Os03t0738400-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 461 0.0 111.3 94.4 96.7
Subject 513 1 513
Annot
Sbicolor Sobic.001G097100.2.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 461 0.0 127.3 94.8 96.7
Subject 587 75 587
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g03810.1.sm.mkhc length: 461 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HMMPIR PIRSF000412 Serine/glycine 1e-166 18-456
HMMPanther PTHR11680 SERINE 2e-266 8-461
HMMPfam PF00464 SHMT 2e-34 51-212
312-395
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 7e-34 80-210
211-308
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 6.2e-56 309-453
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 4.4e-152 32-455
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 243-259
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 2e-266 8-461
Seg seg seg NA 388-400
Pseudomolecule
Chromosome Start End Strand
128065412811476-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 2031231 2031374 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 2031585 2031623 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 2031717 2031803 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 2031921 2032042 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 2032148 2032224 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 2032739 2032863 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 2033271 2033363 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 2033755 2033952 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 2034036 2034140 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 2034597 2034674 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 2034903 2035014 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 2035096 2035206 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 2035318 2035484 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 2035624 2036166 . + . ID=Zjn_sc00013.1.g03810.1.sm.mkhc:exon:14

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