Z. japonica Nagirizaki
Zjn_sc00013.1.g03580.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G19220.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
379 |
38 |
346 |
e-146 |
137.7 |
64.6 |
71.2 |
| Subject |
522 |
63 |
369 |
|
| Annot |
| Symbols: ADG2, APL1 | ADP glucose pyrophosphorylase large subunit 1 | chr5:6463931-6466775 REVERSE LENGTH=522 |
| NR |
ref|XP_004981865.2| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
379 |
1 |
346 |
e-179 |
133.5 |
83.1 |
87.6 |
| Subject |
506 |
2 |
353 |
|
| Annot |
PREDICTED: glucose-1-phosphate adenylyltransferase large subunit [Setaria italica] |
| IRGSP |
Os03t0735000-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
379 |
58 |
346 |
e-155 |
134.8 |
71 |
74.1 |
| Subject |
511 |
70 |
358 |
|
| Annot |
|
| Sbicolor |
Sobic.001G100000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
379 |
1 |
346 |
e-172 |
133.8 |
80.5 |
85 |
| Subject |
507 |
1 |
354 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00013.1.g03580.1.sm.mk |
length: 379 aa. |
| IPR005835 |
Nucleotidyl transferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0016779 |
nucleotidyltransferase activity |
|
|
| HMMPfam |
PF00483 |
NTP_transferase |
8.6e-77 |
68-345 |
| IPR005836 |
ADP-glucose pyrophosphorylase, conserved site |
| Biological Process |
GO:0005978 |
glycogen biosynthetic process |
|
|
| Molecular Function |
GO:0008878 |
glucose-1-phosphate adenylyltransferase activity |
|
|
| PatternScan |
PS00808 |
ADP_GLC_PYROPHOSPH_1 |
NA |
72-91 |
| PatternScan |
PS00809 |
ADP_GLC_PYROPHOSPH_2 |
NA |
163-171 |
| PatternScan |
PS00810 |
ADP_GLC_PYROPHOSPH_3 |
NA |
278-288 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.550.10 |
no description |
1.8e-65 |
67-378 |
| HMMPanther |
PTHR22572 |
SUGAR-1-PHOSPHATE |
2.6e-165 |
34-379 |
| HMMPanther |
PTHR22572:SF10 |
GLUCOSE-1-PHOSPHATE |
2.6e-165 |
34-379 |
| Seg |
seg |
seg |
NA |
3-26 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
1e-78 |
55-365 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 2928602 | 2932921 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1909786 |
1909887 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:11 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1911332 |
1911412 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:10 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1911776 |
1911848 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:9 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1912029 |
1912141 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:8 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1912303 |
1912396 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:7 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1912606 |
1912661 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:6 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1912747 |
1912830 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:5 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1913275 |
1913367 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:4 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1913445 |
1913618 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:3 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1913719 |
1913832 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:2 |
| Zjn_sc00013.1 |
maker_non_over |
exon |
1913950 |
1914105 |
. |
- |
. |
ID=Zjn_sc00013.1.g03580.1.sm.mk:exon:1 |