Z. japonica Nagirizaki
Zjn_sc00013.1.g03350.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G34350.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 329 28 281 e-106 141.6 56.5 65.7
Subject 466 28 307
Annot | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | chr4:16428681-16431038 REVERSE LENGTH=466
NR ref|NP_001169300.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 329 1 281 e-131 140.4 73.6 79.9
Subject 462 1 303
Annot uncharacterized protein LOC100383164 [Zea mays] gi|224028507|gb|ACN33329.1| unknown [Zea mays] gi|289470758|gb|ADC96733.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Zea mays] gi|414872616|tpg|DAA51173.1| TPA: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Zea mays]
IRGSP Os03t0731900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 329 1 281 e-128 139.5 70.8 77.2
Subject 459 1 300
Annot
Sbicolor Sobic.001G102500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 329 1 281 e-127 141 73.6 79.6
Subject 464 1 305
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g03350.1.sm.mkhc length: 329 aa.
IPR003451 LytB protein
method AccNumber shortName E-value location
Biological Process GO:0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02401 LYTB 1.8e-05 112-261
286-317
no_ID  
HMMPanther PTHR31619 FAMILY 3.8e-88 8-281
HMMPanther PTHR31619:SF0 SUBFAMILY 3.8e-88 8-281
Seg seg seg NA 23-31
40-55
Pseudomolecule
Chromosome Start End Strand
130181363023629+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 1819078 1819615 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 1819779 1819865 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 1821416 1821469 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 1821731 1821862 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 1821968 1822147 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 1824021 1824217 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 1824298 1824571 . - . ID=Zjn_sc00013.1.g03350.1.sm.mkhc:exon:1

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