Z. japonica Nagirizaki
Zjn_sc00013.1.g03210.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G22840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 70 547 1e-60 90.1 32 43
Subject 530 80 488
Annot | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530
NR ref|XP_004981896.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 1 588 0.0 100.3 82 88.6
Subject 590 1 590
Annot PREDICTED: growth-regulating factor 6-like [Setaria italica]
IRGSP Os03t0729500-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 139 588 0.0 77.6 61.7 67
Subject 456 1 456
Annot
Sbicolor Sobic.001G104500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 588 27 588 0.0 102.2 76.5 82.1
Subject 601 31 601
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g03210.1.sm.mkhc length: 588 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 2.9e-21 215-258
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 3.9e-16 148-184
HMMSmart SM00951 no description 1.2e-11 148-184
no_ID  
HMMPanther PTHR31602 FAMILY 5.3e-98 139-587
Seg seg seg NA 4-28
51-61
79-103
172-186
263-279
375-388
435-451
544-556
Pseudomolecule
Chromosome Start End Strand
130879143091913-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 1750794 1751178 . + . ID=Zjn_sc00013.1.g03210.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 1752137 1752349 . + . ID=Zjn_sc00013.1.g03210.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 1752492 1752858 . + . ID=Zjn_sc00013.1.g03210.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 1753180 1754793 . + . ID=Zjn_sc00013.1.g03210.1.sm.mkhc:exon:4

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