Z. japonica Nagirizaki
Zjn_sc00013.1.g02520.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G17330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
511 |
1 |
511 |
0.0 |
98.2 |
81.4 |
88.1 |
| Subject |
502 |
1 |
502 |
|
| Annot |
| Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 |
| NR |
ref|XP_004981955.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
511 |
1 |
511 |
0.0 |
96.5 |
92.4 |
94.5 |
| Subject |
493 |
1 |
493 |
|
| Annot |
PREDICTED: glutamate decarboxylase 1-like [Setaria italica] |
| IRGSP |
Os03t0720300-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
511 |
1 |
511 |
0.0 |
96.3 |
91 |
93.3 |
| Subject |
492 |
1 |
492 |
|
| Annot |
|
| Sbicolor |
Sobic.001G111000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
511 |
1 |
511 |
0.0 |
96.5 |
92.6 |
94.7 |
| Subject |
493 |
1 |
493 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00013.1.g02520.1.sm.mkhc |
length: 511 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
3.4e-104 |
51-399 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
0 |
10-511 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
1.6e-206 |
47-462 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
2.5e-28 |
93-329 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
2.2e-128 |
12-466 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
0 |
10-511 |
| Seg |
seg |
seg |
NA |
474-482 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 3446832 | 3451057 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00013.1 |
maker |
exon |
1391650 |
1391789 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:1 |
| Zjn_sc00013.1 |
maker |
exon |
1391862 |
1392066 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:2 |
| Zjn_sc00013.1 |
maker |
exon |
1394019 |
1394219 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:3 |
| Zjn_sc00013.1 |
maker |
exon |
1394311 |
1394525 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:4 |
| Zjn_sc00013.1 |
maker |
exon |
1394671 |
1394924 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:5 |
| Zjn_sc00013.1 |
maker |
exon |
1395001 |
1395053 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:6 |
| Zjn_sc00013.1 |
maker |
exon |
1395192 |
1395875 |
. |
+ |
. |
ID=Zjn_sc00013.1.g02520.1.sm.mkhc:exon:7 |