Z. japonica Nagirizaki
Zjn_sc00013.1.g02100.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G37600.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 391 1 382 e-180 91 75.7 85.2
Subject 356 1 356
Annot | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356
NR ref|XP_004981993.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 391 1 391 0.0 93.9 86.4 91.6
Subject 367 1 367
Annot PREDICTED: glutamine synthetase cytosolic isozyme 1-3 [Setaria italica]
IRGSP Os03t0712800-02_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 391 2 387 0.0 94.6 82.9 88.2
Subject 370 4 363
Annot
Sbicolor Sobic.004G247000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 391 1 382 0.0 91 77.2 86.7
Subject 356 1 356
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g02100.1.sm.mkhc length: 391 aa.
IPR008146 Glutamine synthetase, catalytic domain
method AccNumber shortName E-value location
Molecular Function GO:0004356 glutamate-ammonia ligase activity    
Biological Process GO:0006807 nitrogen compound metabolic process    
HMMPfam PF00120 Gln-synt_C 6.5e-08 104-306
331-376
IPR008147 Glutamine synthetase, beta-Grasp
Molecular Function GO:0004356 glutamate-ammonia ligase activity    
Biological Process GO:0006542 glutamine biosynthetic process    
Biological Process GO:0006807 nitrogen compound metabolic process    
Gene3D G3DSA:3.10.20.70 no description 0.00054 53-104
HMMPfam PF03951 Gln-synt_N 9.3e-20 19-97
superfamily SSF54368 Glutamine 6.5e-19 3-103
IPR014746 Glutamine synthetase/guanido kinase, catalytic domain
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.30.590.10 no description 2e-59 121-374
IPR027302 Glutamine synthetase, N-terminal conserved site
PatternScan PS00180 GLNA_1 NA 55-72
IPR027303 Glutamine synthetase, glycine-rich site
PatternScan PS00181 GLNA_ATP NA 237-253
no_ID  
HMMPanther PTHR20852 GLUTAMINE 5.4e-173 17-381
HMMPanther PTHR20852:SF14 GLUTAMINE 5.4e-173 17-381
Seg seg seg NA 141-158
superfamily SSF55931 Glutamine 3.5e-64 103-379
Pseudomolecule
Chromosome Start End Strand
136964103699244+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 1143463 1143581 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 1143685 1143745 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 1143816 1144053 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 1144140 1144177 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 1144281 1144334 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 1144444 1144518 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 1144599 1144727 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 1144838 1144925 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 1145016 1145122 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 1145250 1145298 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 1145390 1145493 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 1145666 1145705 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 1146137 1146297 . - . ID=Zjn_sc00013.1.g02100.1.sm.mkhc:exon:1

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