Z. japonica Nagirizaki
Zjn_sc00013.1.g01680.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G14920.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 52 643 0.0 82.6 51.6 62.8
Subject 533 12 531
Annot | Symbols: GAI, RGA2 | GRAS family transcription factor family protein | chr1:5149414-5151015 FORWARD LENGTH=533
NR gb|AFD62391.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 31 645 0.0 95.7 87.8 89
Subject 617 2 617
Annot reduced height-2 [Eragrostis tef] gi|380504014|gb|AFD62392.1| reduced height-2 [Eragrostis tef] gi|380504016|gb|AFD62393.1| reduced height-2 [Eragrostis tef] gi|380504018|gb|AFD62394.1| reduced height-2 [Eragrostis tef] gi|380504020|gb|AFD62395.1| reduced height-2 [Eragrostis tef]
IRGSP Os03t0707600-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 31 645 0.0 96.9 82 86.8
Subject 625 2 625
Annot
Sbicolor Sobic.001G120900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 31 644 0.0 97.2 83.4 87.3
Subject 627 2 626
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g01680.1.am.mk length: 645 aa.
IPR005202 Transcription factor GRAS
method AccNumber shortName E-value location
HMMPfam PF03514 GRAS 7.7e-139 264-641
ProfileScan PS50985 GRAS 67.736 238-620
IPR021914 Transcriptional factor DELLA, N-terminal
HMMPfam PF12041 DELLA 5.9e-34 68-143
no_ID  
HMMPanther PTHR31636 FAMILY 3.2e-166 240-645
Seg seg seg NA 38-50
95-107
136-161
173-183
189-208
214-232
237-255
322-340
Pseudomolecule
Chromosome Start End Strand
138876093889994-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker_non_over exon 952713 952781 . + . ID=Zjn_sc00013.1.g01680.1.am.mk:exon:1
Zjn_sc00013.1 maker_non_over exon 953230 955098 . + . ID=Zjn_sc00013.1.g01680.1.am.mk:exon:2

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