Z. japonica Nagirizaki
Zjn_sc00013.1.g01230.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G44350.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 472 1 472 0.0 100.2 82 92.6
Subject 473 1 472
Annot | Symbols: ATCS, CSY4 | Citrate synthase family protein | chr2:18316673-18320524 FORWARD LENGTH=473
NR gb|EAY81201.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 472 1 472 0.0 108.5 93.2 97
Subject 512 41 512
Annot hypothetical protein OsI_36380 [Oryza sativa Indica Group]
IRGSP Os11t0538900-01_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 472 1 472 0.0 104.7 93.2 97
Subject 494 23 494
Annot
Sbicolor Sobic.004G078000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 472 1 472 0.0 100 93 97.5
Subject 472 1 472
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g01230.1.sm.mkhc length: 472 aa.
IPR002020 Citrate synthase-like
method AccNumber shortName E-value location
Biological Process GO:0044262 cellular carbohydrate metabolic process    
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer    
FPrintScan PR00143 CITRTSNTHASE 2.1e-50 212-225
260-275
283-311
343-363
404-420
425-439
HMMPanther PTHR11739 CITRATE 3.5e-227 19-464
HMMPfam PF00285 Citrate_synt 2.3e-105 78-455
IPR010109 Citrate synthase, eukaryotic
Molecular Function GO:0004108 citrate (Si)-synthase activity    
Biological Process GO:0044262 cellular carbohydrate metabolic process    
HMMTigr TIGR01793 cit_synth_euk: 2.8e-241 38-463
IPR016141 Citrate synthase-like, core
Biological Process GO:0044262 cellular carbohydrate metabolic process    
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer    
superfamily SSF48256 Citrate 4.2e-141 35-470
IPR016142 Citrate synthase-like, large alpha subdomain
Biological Process GO:0044262 cellular carbohydrate metabolic process    
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer    
Gene3D G3DSA:1.10.580.10 no description 4.2e-125 39-357
IPR019810 Citrate synthase active site
Biological Process GO:0006099 tricarboxylic acid cycle    
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer    
PatternScan PS00480 CITRATE_SYNTHASE NA 350-362
no_ID  
Coil coil coiled-coil NA 41-62
HMMPanther PTHR11739:SF0 SUBFAMILY 3.5e-227 19-464
Seg seg seg NA 119-131
Pseudomolecule
Chromosome Start End Strand
141321894139290-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 703417 704115 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:1
Zjn_sc00013.1 maker exon 704360 704434 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:2
Zjn_sc00013.1 maker exon 704554 704616 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:3
Zjn_sc00013.1 maker exon 704738 704779 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:4
Zjn_sc00013.1 maker exon 705229 705294 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:5
Zjn_sc00013.1 maker exon 705396 705461 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:6
Zjn_sc00013.1 maker exon 705823 705936 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:7
Zjn_sc00013.1 maker exon 706119 706182 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:8
Zjn_sc00013.1 maker exon 706379 706461 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:9
Zjn_sc00013.1 maker exon 706678 706727 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:10
Zjn_sc00013.1 maker exon 706817 706894 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:11
Zjn_sc00013.1 maker exon 707028 707156 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:12
Zjn_sc00013.1 maker exon 707252 707294 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:13
Zjn_sc00013.1 maker exon 708257 708343 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:14
Zjn_sc00013.1 maker exon 708711 708812 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:15
Zjn_sc00013.1 maker exon 709028 709135 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:16
Zjn_sc00013.1 maker exon 709210 709260 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:17
Zjn_sc00013.1 maker exon 709348 709421 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:18
Zjn_sc00013.1 maker exon 709546 709597 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:19
Zjn_sc00013.1 maker exon 709694 710518 . + . ID=Zjn_sc00013.1.g01230.1.sm.mkhc:exon:20

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