Z. japonica Nagirizaki
Zjn_sc00013.1.g00460.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G21175.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 69 242 3e-52 102.8 36.2 44.6
Subject 295 78 254
Annot | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295
NR ref|XP_002464073.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 48 267 2e-95 105.6 61.3 66.9
Subject 303 57 289
Annot hypothetical protein SORBIDRAFT_01g011840 [Sorghum bicolor] gi|241917927|gb|EER91071.1| hypothetical protein SORBIDRAFT_01g011840 [Sorghum bicolor]
IRGSP Os03t0684000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 46 286 2e-98 111.1 63.4 71.4
Subject 319 59 316
Annot
Sbicolor Sobic.001G135400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 48 267 2e-98 105.6 61.3 66.9
Subject 303 57 289
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00013.1.g00460.1.am.mkhc length: 287 aa.
IPR000679 Zinc finger, GATA-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00320 GATA 1.2e-13 205-239
HMMSmart SM00401 zinc 7.6e-08 199-251
PatternScan PS00344 GATA_ZN_FINGER_1 NA 205-232
IPR010399 Tify
HMMPfam PF06200 tify 1.3e-10 67-98
HMMSmart SM00979 no description 2e-07 64-99
ProfileScan PS51320 TIFY 14.310 64-99
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 2.6e-16 133-175
ProfileScan PS51017 CCT 13.324 133-175
IPR013088 Zinc finger, NHR/GATA-type
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:3.30.50.10 no description 1e-12 204-239
no_ID  
HMMPanther PTHR10071 TRANSCRIPTION 5.8e-16 120-242
HMMPanther PTHR10071:SF128SUBFAMILY NOT 5.8e-16 120-242
Seg seg seg NA 3-19
24-60
superfamily SSF57716 Glucocorticoid 4e-10 199-239
Pseudomolecule
Chromosome Start End Strand
145034364508373+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00013.1 maker exon 334334 335567 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:7
Zjn_sc00013.1 maker exon 335643 335731 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:6
Zjn_sc00013.1 maker exon 336844 336949 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:5
Zjn_sc00013.1 maker exon 337036 337155 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:4
Zjn_sc00013.1 maker exon 337931 338067 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:3
Zjn_sc00013.1 maker exon 338151 338237 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:2
Zjn_sc00013.1 maker exon 339005 339271 . - . ID=Zjn_sc00013.1.g00460.1.am.mkhc:exon:1

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