Z. japonica Nagirizaki
Zjn_sc00012.1.g07860.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G48730.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
471 |
6 |
471 |
0.0 |
100.2 |
77.3 |
86.8 |
| Subject |
472 |
8 |
472 |
|
| Annot |
| Symbols: GSA2 | glutamate-1-semialdehyde 2,1-aminomutase 2 | chr3:18049697-18051550 FORWARD LENGTH=472 |
| NR |
ref|XP_004961658.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
471 |
15 |
471 |
0.0 |
100.4 |
92.4 |
94.7 |
| Subject |
473 |
16 |
473 |
|
| Annot |
PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Setaria italica] |
| IRGSP |
Os08t0532200-03_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
471 |
15 |
471 |
0.0 |
101.5 |
90.2 |
94.3 |
| Subject |
478 |
21 |
478 |
|
| Annot |
|
| Sbicolor |
Sobic.009G180800.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
471 |
15 |
471 |
0.0 |
100.4 |
91.5 |
94.5 |
| Subject |
473 |
16 |
473 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00012.1.g07860.1.sm.mkhc |
length: 471 aa. |
| IPR004639 |
Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0033014 |
tetrapyrrole biosynthetic process |
|
|
| Molecular Function |
GO:0042286 |
glutamate-1-semialdehyde 2,1-aminomutase activity |
|
|
| HAMAP |
MF_00375 |
HemL_aminotrans_3 |
101.211 |
49-471 |
| HMMPanther |
PTHR11986:SF5 |
GLUTAMATE-1-SEMIALDEHYDE |
5.6e-201 |
48-471 |
| HMMTigr |
TIGR00713 |
hemL: |
1.1e-182 |
49-470 |
| IPR005814 |
Aminotransferase class-III |
| Molecular Function |
GO:0008483 |
transaminase activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11986 |
AMINOTRANSFERASE |
5.6e-201 |
48-471 |
| HMMPfam |
PF00202 |
Aminotran_3 |
4.9e-64 |
85-383 |
| PatternScan |
PS00600 |
AA_TRANSFER_CLASS_3 |
NA |
280-316 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
1.2e-78 |
116-361 |
| IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.90.1150.10 |
no description |
1.1e-37 |
364-470 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
8.6e-128 |
45-471 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
2-38 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 17 | 7352171 | 7354974 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00012.1 |
maker |
exon |
3323835 |
3325129 |
. |
- |
. |
ID=Zjn_sc00012.1.g07860.1.sm.mkhc:exon:3 |
| Zjn_sc00012.1 |
maker |
exon |
3325608 |
3325781 |
. |
- |
. |
ID=Zjn_sc00012.1.g07860.1.sm.mkhc:exon:2 |
| Zjn_sc00012.1 |
maker |
exon |
3326432 |
3326638 |
. |
- |
. |
ID=Zjn_sc00012.1.g07860.1.sm.mkhc:exon:1 |