Z. japonica Nagirizaki
Zjn_sc00012.1.g07320.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G08690.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
197 |
50 |
197 |
2e-81 |
75.1 |
71.6 |
74.1 |
| Subject |
148 |
1 |
148 |
|
| Annot |
| Symbols: UBC11 | ubiquitin-conjugating enzyme 11 | chr3:2641487-2642489 FORWARD LENGTH=148 |
| NR |
gb|EMS65000.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
197 |
42 |
197 |
7e-84 |
110.2 |
74.6 |
77.2 |
| Subject |
217 |
62 |
217 |
|
| Annot |
Ubiquitin-conjugating enzyme E2-17 kDa [Triticum urartu] |
| IRGSP |
Os01t0819400-00_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
197 |
42 |
197 |
9e-85 |
80.2 |
74.6 |
76.6 |
| Subject |
158 |
3 |
158 |
|
| Annot |
|
| Sbicolor |
Sobic.009G174900.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
197 |
50 |
197 |
7e-84 |
75.1 |
74.6 |
74.6 |
| Subject |
148 |
1 |
148 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00012.1.g07320.1.sm.mkhc |
length: 197 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
5.5e-53 |
54-190 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
48.809 |
53-185 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
6.8e-82 |
49-196 |
| superfamily |
SSF54495 |
UBC-like |
2.9e-67 |
48-197 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
123-138 |
| no_ID |
|
| HMMPanther |
PTHR24068 |
FAMILY |
8.5e-116 |
50-196 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
3.2e-80 |
53-196 |
| Seg |
seg |
seg |
NA |
18-30 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 17 | 7635931 | 7639523 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00012.1 |
maker |
exon |
3039286 |
3039917 |
. |
- |
. |
ID=Zjn_sc00012.1.g07320.1.sm.mkhc:exon:5 |
| Zjn_sc00012.1 |
maker |
exon |
3040341 |
3040445 |
. |
- |
. |
ID=Zjn_sc00012.1.g07320.1.sm.mkhc:exon:4 |
| Zjn_sc00012.1 |
maker |
exon |
3041410 |
3041537 |
. |
- |
. |
ID=Zjn_sc00012.1.g07320.1.sm.mkhc:exon:3 |
| Zjn_sc00012.1 |
maker |
exon |
3041715 |
3041793 |
. |
- |
. |
ID=Zjn_sc00012.1.g07320.1.sm.mkhc:exon:2 |
| Zjn_sc00012.1 |
maker |
exon |
3042741 |
3042878 |
. |
- |
. |
ID=Zjn_sc00012.1.g07320.1.sm.mkhc:exon:1 |