Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00012.1.g06840.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00012.1)

BLAST

TAIR10	AT4G33070.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	364	26	259	e-107	166.8	51.1	56.3
		Subject	607	26	258
		Annot	\| Symbols: \| Thiamine pyrophosphate dependent pyruvate decarboxylase family protein \| chr4:15952519-15954676 REVERSE LENGTH=607
NR	sp\|A2Y5L9.1\|PDC1_ORYSI		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	364	1	259	e-128	166.2	62.6	66.2
		Subject	605	1	256
		Annot	RecName: Full=Pyruvate decarboxylase 1; Short=PDC gi\|125552670\|gb\|EAY98379.1\| hypothetical protein OsI_20290 [Oryza sativa Indica Group]
IRGSP	Os05t0469600-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	364	1	259	e-131	166.2	62.6	66.2
		Subject	605	1	256
		Annot
Sbicolor	Sobic.009G169000.1.p\|Chr09\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	364	1	259	e-129	167.3	62.4	65.9
		Subject	609	1	260
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR012001	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
Zjn_sc00012.1.g06840.1.sm.mkhc				length: 364 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF02776	TPP_enzyme_N	5.3e-37	47-213
IPR012110	Thiamine pyrophosphate (TPP)-dependent enzyme
HMMPanther	PTHR18968:SF4	PYRUVATE	1e-105	46-259
no_ID
Gene3D	G3DSA:3.40.50.970	no description	2.5e-18	46-225 253-350
HMMPanther	PTHR18968	THIAMINE	1e-105	46-259
Seg	seg	seg	NA	31-46
superfamily	SSF52518	Thiamin	1.1e-15	45-230 260-364

Pseudomolecule

Chromosome	Start	End	Strand
17	7872754	7875003	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00012.1	maker	exon	2803806	2804403	.	+	.	ID=Zjn_sc00012.1.g06840.1.sm.mkhc:exon:1
Zjn_sc00012.1	maker	exon	2804490	2804653	.	+	.	ID=Zjn_sc00012.1.g06840.1.sm.mkhc:exon:2
Zjn_sc00012.1	maker	exon	2804751	2804829	.	+	.	ID=Zjn_sc00012.1.g06840.1.sm.mkhc:exon:3
Zjn_sc00012.1	maker	exon	2805738	2806055	.	+	.	ID=Zjn_sc00012.1.g06840.1.sm.mkhc:exon:4